genome.fa.s7224.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007224.1 Hibiscus syriacus cultivar Beakdansim tig00019116_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66456

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427--453	12	2.2	12	100	0	54	14	0	40	44	1.46
655--688	14	2.4	14	85	0	50	32	2	14	50	1.58
1940--2044	31	3.4	30	80	7	104	35	3	12	48	1.59
1966--2044	32	2.5	32	85	4	99	32	3	13	49	1.61
2301--2340	17	2.4	17	100	0	80	12	5	15	67	1.38
11622--11729	54	2.0	54	100	0	216	40	11	14	33	1.82
11964--12011	22	2.2	22	81	7	53	8	20	4	66	1.35
16513--16541	14	2.1	14	93	6	51	27	6	0	65	1.18
16616--16836	110	2.0	111	91	0	363	35	9	9	46	1.67
22117--22147	15	2.1	15	100	0	62	32	41	19	6	1.77
22137--22249	21	5.5	21	70	11	81	35	21	18	24	1.96
22200--22432	20	11.5	20	75	4	144	38	24	18	18	1.93
22200--22369	41	4.2	41	84	5	197	38	24	18	18	1.92
22241--22412	61	2.8	61	88	4	240	39	25	17	18	1.91
22241--22432	101	1.9	102	92	1	323	38	25	17	18	1.92
22241--22435	41	4.8	39	83	8	180	38	25	17	17	1.92
22241--22434	20	9.6	20	79	9	196	38	25	18	18	1.93
22995--23066	20	3.6	19	77	5	72	51	19	15	13	1.76
23058--23128	14	4.7	14	80	16	79	43	22	23	9	1.83
23072--23144	33	2.2	33	92	0	119	45	24	20	9	1.81
23140--23285	19	8.1	19	71	17	114	13	22	17	45	1.84
23181--23233	14	3.4	14	72	22	52	7	26	22	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23162--23257	33	2.9	33	88	1	138	12	21	21	43	1.86
25315--25375	21	3.0	20	64	7	50	24	36	18	21	1.95
26721--26757	14	2.6	15	83	12	51	27	0	21	51	1.48
26869--26945	19	4.3	19	75	18	83	45	15	23	15	1.84
26949--26988	20	2.0	20	95	0	71	22	25	22	30	1.99
27205--27277	19	4.1	19	73	20	75	46	16	21	15	1.83
27281--27384	18	5.9	18	78	16	119	16	21	18	44	1.87
27289--27384	37	2.8	34	84	12	117	16	20	17	44	1.86
27397--27443	20	2.3	20	85	0	67	23	21	21	34	1.97
27660--27811	19	8.1	19	91	4	245	47	14	21	17	1.82
27821--27905	33	2.5	33	88	1	116	16	23	16	43	1.87
27888--27942	20	2.8	20	91	0	83	21	21	23	32	1.98
30359--30405	24	2.0	24	95	0	85	34	17	21	27	1.95
30363--30414	24	2.2	24	85	0	68	36	19	19	25	1.95
31255--31525	60	4.5	60	82	3	310	21	19	22	36	1.95
31257--31586	40	8.2	40	85	4	333	21	19	21	37	1.94
31255--31586	20	16.5	20	77	8	280	21	19	21	37	1.94
32167--32274	47	2.2	49	88	8	159	29	20	25	25	1.99
32278--32371	41	2.3	41	92	0	161	17	32	31	18	1.93
39020--39069	19	2.6	20	90	9	86	22	18	24	36	1.95
42718--42768	28	1.9	27	88	11	79	50	0	0	49	1.00
43822--43861	15	2.6	16	84	4	55	27	25	5	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45641--45673	3	11.0	3	100	0	66	33	0	0	66	0.92
47445--47496	27	2.0	27	88	3	79	44	19	5	30	1.74
48093--48140	18	2.7	18	80	9	62	41	0	4	54	1.20
62194--62246	20	2.6	22	71	17	60	20	35	22	20	1.96
62366--62398	17	2.0	16	94	5	57	60	21	6	12	1.53
64802--64829	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!