genome.fa.s7226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007226.1 Hibiscus syriacus cultivar Beakdansim tig00019121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69782

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226--312	31	2.8	31	78	5	86	39	5	12	42	1.67
233--325	31	3.0	30	78	6	78	40	5	10	43	1.62
1975--2006	2	16.0	2	100	0	64	0	50	0	50	1.00
5766--5878	57	2.0	57	85	0	154	52	17	15	14	1.75
5766--5867	28	3.6	28	77	12	109	52	18	14	13	1.74
7173--7252	40	2.0	40	92	0	133	48	17	12	21	1.80
12083--12192	31	3.5	30	68	17	89	22	22	19	35	1.96
12084--12201	37	3.5	34	75	24	126	22	22	19	35	1.96
12083--12201	63	1.9	63	96	0	220	22	22	19	35	1.96
12294--12382	21	4.3	21	68	22	71	46	1	2	50	1.21
12420--12464	23	2.0	23	82	8	56	53	2	4	40	1.33
12770--13218	223	2.0	223	98	0	871	35	15	18	31	1.92
18875--18917	21	2.0	21	81	0	50	30	30	25	13	1.94
18984--19009	12	2.2	12	100	0	52	76	0	23	0	0.78
19385--19688	149	2.0	149	97	0	572	27	15	20	36	1.93
19667--19711	23	2.0	23	86	0	63	20	24	28	26	1.99
25764--25806	21	2.0	21	81	0	50	30	30	25	13	1.94
26347--26650	149	2.0	149	96	0	554	27	15	19	37	1.92
26629--26673	23	2.0	23	86	0	63	20	24	28	26	1.99
38603--38669	22	3.0	22	100	0	134	26	26	26	19	1.99
38889--38948	30	2.0	31	86	3	86	31	23	6	38	1.81
38963--39034	29	2.5	29	90	0	108	37	13	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39338--39490	69	2.2	69	87	1	209	18	28	26	26	1.98
39470--39512	21	2.0	21	86	0	59	16	25	27	30	1.97
45543--45593	22	2.3	22	93	0	84	31	25	25	17	1.97
45551--45595	22	2.0	22	100	0	90	26	26	26	20	1.99
45815--45874	30	2.0	31	86	3	86	31	23	6	38	1.81
45889--45960	29	2.5	29	90	0	108	37	13	9	38	1.78
46264--46416	69	2.2	69	87	1	209	18	28	26	26	1.98
46396--46438	21	2.0	21	86	0	59	16	25	27	30	1.97
48469--48511	21	2.0	21	81	0	50	27	30	25	16	1.97
49063--49277	103	2.1	103	97	0	403	26	12	24	36	1.91
49297--49359	23	2.7	23	85	4	83	19	26	28	25	1.98
55404--55446	21	2.0	21	81	0	50	27	30	25	16	1.97
55993--56210	103	2.1	103	97	0	409	24	12	24	37	1.91
56227--56289	23	2.7	23	82	4	83	20	25	26	26	1.99
57702--57773	22	3.3	22	84	5	101	27	20	23	27	1.99
57710--57772	21	3.0	21	88	2	90	23	23	25	26	2.00
59150--59310	64	2.5	64	85	5	209	27	20	18	33	1.96
60256--60334	31	2.5	31	93	0	131	18	18	21	40	1.92
60258--60349	31	3.0	31	88	3	96	21	18	21	38	1.94
61516--61552	20	1.9	19	89	10	58	24	32	24	18	1.97

Tables:   1

The End!