genome.fa.s7227.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007227.1 Hibiscus syriacus cultivar Beakdansim tig00019129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178692

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553--582	15	1.9	16	93	6	53	33	13	0	53	1.40
6621--6670	25	2.0	25	100	0	100	40	8	8	44	1.63
6731--6795	26	2.5	26	78	9	69	23	3	35	38	1.70
11738--11794	24	2.4	24	84	0	87	12	12	17	57	1.64
17315--17371	29	1.9	30	85	3	80	45	5	24	24	1.74
17445--17474	2	15.0	2	92	0	51	50	3	0	46	1.18
21206--21254	21	2.3	21	82	6	55	28	20	20	30	1.98
21760--21785	2	13.0	2	100	0	52	50	0	0	50	1.00
23874--23921	23	2.1	23	84	7	62	37	4	10	47	1.57
23945--23987	14	3.1	14	79	0	50	60	4	11	23	1.50
25604--25630	14	1.9	14	100	0	54	59	14	11	14	1.62
25571--25649	34	2.4	33	82	2	95	63	16	7	12	1.51
31225--31323	21	4.8	20	75	6	81	37	23	18	21	1.94
31290--31444	40	3.8	40	82	4	186	37	26	18	18	1.93
31290--31443	20	7.7	20	80	7	168	37	26	18	18	1.93
31826--31895	33	2.1	33	91	0	113	11	22	18	47	1.81
31975--32084	21	5.8	20	73	17	99	45	18	23	12	1.83
31968--32084	41	3.1	37	80	14	134	46	17	24	11	1.82
32035--32091	14	3.7	14	75	20	60	43	22	24	8	1.81
32027--32107	33	2.5	33	95	0	144	46	22	22	8	1.78
32103--32200	19	5.7	19	68	22	81	11	21	21	45	1.82
32125--32214	14	5.7	14	69	23	63	10	22	22	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32108--32222	33	3.5	33	95	0	212	10	21	20	47	1.79
33919--34573	93	7.1	93	99	0	1285	21	12	19	46	1.83
34621--34749	19	7.3	19	75	17	125	45	28	17	8	1.77
34657--34749	33	2.8	32	91	4	150	46	27	18	7	1.76
34621--34749	52	2.5	52	74	14	140	45	28	17	8	1.77
34745--34879	19	7.6	19	75	16	128	11	19	23	45	1.82
34767--34823	14	3.7	14	77	20	60	10	21	22	45	1.82
34750--34842	33	2.8	33	95	0	168	10	20	21	47	1.80
36798--36832	13	2.6	14	90	4	54	31	0	22	45	1.53
36939--37036	19	5.4	19	83	13	134	46	17	21	14	1.83
36939--37055	53	2.2	53	95	1	209	44	17	23	13	1.85
37045--37181	19	7.7	19	78	17	159	16	20	18	45	1.86
37045--37181	72	1.9	71	89	4	213	16	20	18	45	1.86
37051--37195	33	4.2	33	80	13	184	14	20	18	46	1.84
39427--39451	12	2.1	12	100	0	50	0	28	0	72	0.86
39626--39672	24	2.0	24	87	8	69	38	21	14	25	1.92
40353--40622	20	13.5	20	87	1	290	20	17	25	37	1.94
40589--40687	21	4.8	20	75	6	81	21	18	22	38	1.93
40589--40687	42	2.4	43	77	11	100	21	18	22	38	1.93
41733--41771	8	5.0	8	96	3	71	10	12	0	76	1.01
51901--51977	31	2.5	30	77	6	82	23	14	15	46	1.82
53770--53807	19	2.0	19	94	0	67	31	23	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53773--53815	19	2.4	18	85	11	54	32	18	13	34	1.90
56333--56378	20	2.3	20	80	0	56	56	2	0	41	1.11
57335--57682	151	2.3	149	81	6	384	13	20	16	50	1.78
68998--69052	29	1.9	28	88	3	83	29	27	12	30	1.93
69377--69417	18	2.3	18	91	4	66	29	4	2	63	1.28
73523--73570	23	2.1	23	88	0	69	35	12	18	33	1.89
73946--73999	23	2.5	20	75	18	54	42	18	1	37	1.61
73961--74023	23	2.7	23	90	0	90	38	19	6	36	1.77
74371--74424	23	2.5	20	75	18	54	42	18	1	37	1.61
74386--74448	23	2.7	23	90	0	90	38	19	6	36	1.77
74799--74852	23	2.5	20	75	18	54	42	18	1	37	1.61
74814--74876	23	2.7	23	90	0	90	38	19	6	36	1.77
73681--74974	426	3.0	429	98	1	2528	38	13	8	39	1.74
77431--78475	184	5.7	184	97	1	1968	34	15	15	35	1.89
79840--79890	3	17.0	3	83	0	66	25	33	3	37	1.74
79840--79902	12	5.2	12	90	0	81	23	33	6	36	1.80
79844--79905	18	3.4	18	88	0	88	20	33	6	38	1.79
79844--79905	6	10.3	6	83	0	61	20	33	6	38	1.79
81367--82770	198	7.1	198	89	6	2212	33	15	14	36	1.88
81367--82770	397	3.6	398	95	3	2619	33	15	14	36	1.88
82083--82461	183	2.1	184	95	0	679	33	15	14	36	1.88
82267--82770	199	2.5	198	94	1	920	33	15	14	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82836--82915	38	2.1	38	83	2	99	55	10	2	32	1.47
82852--82915	19	3.4	19	95	0	110	56	9	3	31	1.47
84702--84767	33	2.0	33	87	0	96	24	45	1	28	1.62
86886--86938	24	2.2	24	83	6	63	26	7	13	52	1.66
87083--87129	20	2.4	19	79	10	58	19	17	8	55	1.67
87247--87296	20	2.5	20	81	12	75	22	16	10	52	1.73
87362--87806	227	2.0	225	94	2	777	39	7	8	45	1.61
89786--89818	14	2.4	14	100	0	66	6	27	6	60	1.44
93804--93844	21	2.0	21	100	0	82	26	9	9	53	1.65
106868--106917	24	2.0	26	88	7	77	56	16	8	20	1.65
112255--112318	30	2.2	29	83	13	78	35	29	3	31	1.73
112842--112972	26	5.0	26	72	10	113	36	15	11	36	1.83
112806--113052	79	3.1	79	92	1	386	36	14	8	40	1.77
112809--113108	79	3.8	79	87	4	308	36	15	8	40	1.77
113044--113312	70	4.0	68	85	6	352	39	14	6	39	1.73
113044--113312	136	2.0	134	91	1	430	39	14	6	39	1.73
122157--122273	60	2.0	60	82	3	146	35	6	13	43	1.71
134701--134761	25	2.7	23	82	10	72	55	1	0	42	1.09
135639--135683	22	2.0	22	86	0	63	20	2	26	51	1.59
135608--135741	65	2.1	64	79	13	141	26	2	20	50	1.60
135871--135916	21	2.2	21	88	0	65	36	15	26	21	1.93
135912--135993	34	2.6	31	78	12	94	30	14	21	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137075--137103	5	5.8	5	100	0	58	41	0	0	58	0.98
138709--138834	60	2.1	60	83	2	155	41	9	9	39	1.70
142676--142750	38	2.0	37	84	5	98	49	2	1	46	1.24
145876--145953	30	2.5	31	80	10	97	51	3	11	33	1.56
153765--153811	20	2.3	20	76	20	53	44	8	8	38	1.65
153921--154330	201	2.0	202	96	0	759	35	14	13	36	1.85
160751--160811	26	2.3	26	91	0	95	22	13	21	42	1.87
163430--163460	2	15.5	2	93	0	53	0	54	0	45	0.99
165752--165812	24	2.7	22	75	14	61	34	0	6	59	1.24
171567--171611	17	2.6	17	82	0	54	57	0	2	40	1.11
172280--172616	42	8.0	41	82	7	208	22	19	20	37	1.95
172286--172617	63	5.3	63	79	9	283	22	19	20	37	1.95
172295--172579	105	2.7	105	96	1	516	22	19	20	37	1.94
172326--172609	21	13.4	21	79	12	278	22	19	19	38	1.94
172452--172613	86	1.9	84	92	2	270	21	20	20	37	1.94

Tables:   1

The End!