genome.fa.s7229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007229.1 Hibiscus syriacus cultivar Beakdansim tig00019138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83028

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2578--2608	2	15.5	2	93	0	53	48	3	0	48	1.17
8822--8857	18	2.0	18	88	0	54	8	33	0	58	1.28
11215--11250	18	1.9	19	88	5	56	47	0	0	52	1.00
12664--12693	16	1.9	15	93	6	51	43	0	13	43	1.43
13014--13041	2	14.0	2	100	0	56	50	0	0	50	1.00
14869--15649	122	6.6	123	84	7	975	26	18	15	38	1.91
14863--15649	235	3.3	234	90	4	1187	26	18	15	38	1.91
15596--15648	17	3.1	17	70	20	56	24	18	11	45	1.82
15664--15990	73	4.5	72	85	5	424	37	12	18	31	1.88
15664--15989	145	2.2	146	88	4	487	38	12	17	31	1.87
17130--17235	52	2.0	54	87	3	153	28	26	14	31	1.95
22866--22905	21	1.9	21	89	0	62	55	7	17	20	1.66
24587--24613	7	3.9	7	100	0	54	85	0	0	14	0.61
25229--25297	27	2.6	25	75	13	66	65	2	2	28	1.22
25471--25500	16	1.9	15	93	6	51	43	0	13	43	1.43
26135--26166	13	2.5	13	94	0	55	65	3	12	18	1.38
27049--27073	2	12.5	2	100	0	50	52	0	0	48	1.00
30136--30375	118	2.0	118	96	0	444	40	10	20	29	1.86
34919--34949	2	15.5	2	100	0	62	48	0	0	51	1.00
35765--35801	3	12.7	3	94	5	67	70	0	0	29	0.88
36441--36800	139	2.6	136	83	6	435	26	18	15	39	1.91
36834--37379	113	4.8	113	87	2	702	28	18	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36719--37357	339	1.9	342	84	4	874	28	19	13	38	1.90
40459--40685	114	2.0	114	95	0	409	31	18	15	33	1.93
42316--42377	32	1.9	32	93	0	106	20	19	16	43	1.88
42861--42917	8	6.6	8	75	13	51	1	17	0	80	0.79
42861--42897	16	2.3	16	95	0	65	0	18	0	81	0.70
42861--42916	16	3.8	15	73	26	57	1	17	0	80	0.80
42876--42919	19	2.4	19	82	14	56	2	18	0	79	0.83
43110--43570	165	2.8	163	89	2	681	26	21	12	39	1.89
49689--49724	3	12.7	3	88	11	58	72	0	0	27	0.85
50369--50839	139	3.6	134	78	10	413	26	17	15	40	1.89
50754--51429	113	6.0	113	90	2	986	28	19	15	37	1.92
50642--51429	339	2.3	338	85	4	1046	27	19	15	37	1.91
52709--52737	11	2.5	12	88	11	51	86	0	0	13	0.58
53330--53422	27	3.6	25	76	13	73	63	1	4	31	1.21
53589--53618	16	1.9	15	93	6	51	43	0	13	43	1.43
54260--54291	13	2.5	13	94	0	55	65	3	12	18	1.38
58343--58582	118	2.0	118	94	0	417	40	10	20	30	1.85
63097--63135	2	20.5	2	84	10	55	46	2	0	51	1.14
63940--64005	3	22.7	3	93	6	118	68	0	0	31	0.90
66189--66246	29	2.0	30	82	3	73	34	3	13	48	1.60
66986--67026	14	2.9	14	83	16	50	24	14	14	46	1.82
73218--73249	7	4.6	7	92	0	55	12	28	28	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77402--77575	64	2.7	64	84	5	210	32	18	21	27	1.97
77920--77969	24	2.1	24	85	7	66	34	4	22	40	1.72
77934--77969	12	3.0	12	91	0	63	33	5	25	36	1.79
77985--78058	29	2.6	29	95	2	132	44	16	20	18	1.87

Tables:   1

The End!