Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000723.1 Hibiscus syriacus cultivar Beakdansim tig00001402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72574

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6730--6781
23
2.3
23
86
0
68
28
19
26
25
1.98
12786--12909
41
3.0
41
98
0
239
25
18
24
32
1.97
16877--16914
2
19.0
2
88
0
58
47
47
5
0
1.24
16914--16941
2
14.0
2
100
0
56
50
0
0
50
1.00
21239--21328
23
3.9
23
83
0
99
31
24
24
20
1.98
29935--30023
22
4.0
22
98
0
160
24
26
26
21
1.99
29948--30010
13
5.5
13
68
27
61
25
26
26
20
1.99
52052--52099
21
2.3
21
89
3
71
37
16
22
22
1.94
52645--52699
19
2.8
20
86
2
85
43
21
21
12
1.86
52742--52818
20
3.9
19
85
6
109
12
22
19
45
1.84
54502--54877
94
4.1
93
95
2
634
21
12
18
46
1.82
54976--55041
19
3.7
19
67
19
61
10
21
21
46
1.80
55518--55584
21
3.2
21
66
6
55
23
35
20
19
1.95
55491--55584
42
2.2
42
81
7
102
22
35
21
21
1.96
56879--56914
14
2.6
14
95
0
63
33
0
22
44
1.53
57021--57152
19
7.7
18
70
26
92
46
21
21
10
1.80
57039--57093
14
3.6
14
73
21
56
45
21
23
9
1.80
57021--57145
33
3.8
33
92
2
198
46
21
20
11
1.82
57086--57162
19
4.3
19
75
18
76
46
23
16
12
1.82
57158--57308
19
8.7
19
66
21
98
11
21
20
45
1.83
57162--57288
33
3.8
33
94
0
218
11
21
19
47
1.81
57261--57354
20
4.7
20
72
13
68
21
20
23
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59815--59868
24
2.2
24
90
0
81
40
20
16
22
1.91
60604--60708
20
5.2
20
94
0
165
26
20
28
24
1.99
60599--60752
20
7.7
20
82
7
159
25
18
25
29
1.98
60742--60793
20
2.5
21
87
3
70
21
23
17
38
1.93
60783--60835
21
2.5
22
78
6
65
35
18
24
20
1.95
65668--65707
2
20.0
2
100
0
80
0
50
0
50
1.00
66076--66102
14
1.9
14
100
0
54
22
14
11
51
1.73
66359--66397
13
3.1
13
85
3
53
33
0
0
66
0.92
67504--67546
21
2.1
20
83
12
52
46
4
9
39
1.57
68005--68051
22
2.1
22
84
7
60
51
2
0
46
1.13
70973--71010
8
4.9
8
80
6
51
34
0
28
36
1.58
71082--71447
125
2.9
125
88
6
548
22
24
20
31
1.98
71800--71833
17
1.9
18
88
5
52
58
2
0
38
1.13
71780--71856
31
2.4
34
81
12
92
61
1
0
37
1.05
71780--71856
32
2.4
32
82
8
95
61
1
0
37
1.05

Tables:   1

The End!