genome.fa.s7230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007230.1 Hibiscus syriacus cultivar Beakdansim tig00019139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61073

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6249--6320	36	2.0	35	89	2	108	31	8	20	38	1.83
7217--7270	22	2.7	18	77	22	63	44	0	11	44	1.39
7224--7277	22	2.4	23	96	3	101	50	0	7	42	1.30
7224--7290	22	3.0	23	89	4	66	52	0	5	41	1.26
8096--8141	20	2.2	21	84	3	58	54	2	0	43	1.12
11767--11820	19	2.8	19	80	5	65	22	1	12	62	1.39
13573--13625	3	17.7	3	100	0	106	33	0	0	66	0.92
13868--13954	42	2.0	43	80	8	97	32	16	0	51	1.44
15068--15119	21	2.5	21	81	3	61	38	19	25	17	1.93
15108--15222	20	5.7	19	76	11	95	34	23	17	24	1.96
15128--15222	41	2.3	41	83	0	127	35	23	16	24	1.95
15148--15222	21	3.7	20	71	10	62	38	22	17	21	1.93
15105--15222	61	1.9	62	84	5	159	36	22	16	23	1.94
15390--15433	22	2.0	22	95	0	79	20	45	15	18	1.85
15697--15753	20	2.8	20	83	0	60	22	19	17	40	1.91
15889--15943	25	2.2	24	78	15	58	20	9	18	52	1.71
17073--17117	18	2.5	18	88	0	72	26	44	15	13	1.83
17598--17664	20	3.4	20	81	2	73	38	23	22	14	1.92
17653--17707	14	3.6	14	77	17	65	49	23	16	10	1.77
17637--17727	32	2.8	33	93	6	159	46	21	18	13	1.83
17744--17834	14	5.9	14	74	20	74	12	17	21	48	1.80
17739--17850	33	3.4	33	96	1	199	12	18	21	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17823--17890	20	3.5	20	80	9	77	14	22	23	39	1.91
18443--18479	16	2.3	16	100	0	74	18	16	27	37	1.92
19776--19811	14	2.6	14	90	0	54	30	0	22	47	1.52
19948--20015	19	3.8	19	85	14	101	47	17	22	13	1.82
20022--20111	40	2.4	36	82	12	103	16	20	20	43	1.88
20052--20111	20	3.0	21	68	9	61	16	21	18	43	1.88
20399--20450	20	2.5	21	87	3	70	21	23	17	38	1.93
20647--20680	12	2.9	12	86	4	52	17	41	5	35	1.74
21235--21288	24	2.2	24	90	0	81	22	16	20	40	1.91
21463--21499	12	3.1	12	100	0	74	72	0	27	0	0.84
23790--23916	33	3.8	33	87	8	204	41	19	23	14	1.89
23791--23923	66	2.0	66	98	0	257	40	19	23	16	1.91
23931--23987	14	3.7	14	75	20	60	10	24	21	43	1.83
23916--24005	33	2.7	33	94	0	153	14	22	20	43	1.87
23947--24005	19	3.4	19	73	22	74	13	22	18	45	1.84
24111--24147	14	2.6	14	91	0	65	45	24	0	29	1.53
27739--27837	33	3.0	33	92	1	162	39	23	26	11	1.88
27714--27859	19	8.1	19	71	17	105	42	19	24	13	1.87
27855--27899	19	2.4	19	92	0	72	8	15	26	48	1.74
28450--28502	20	2.7	20	93	0	88	26	20	28	24	1.99
28511--28564	20	2.7	20	97	0	99	25	18	24	31	1.97
28451--28567	61	1.9	61	85	0	162	23	17	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28451--28585	61	2.2	61	81	2	155	22	20	24	32	1.98
31166--31263	49	2.0	49	82	9	121	48	6	5	39	1.50
41526--41550	2	12.5	2	100	0	50	48	0	0	52	1.00
41652--41698	24	2.0	24	91	0	76	31	8	8	51	1.63
42628--42675	23	2.1	23	84	0	60	43	4	16	35	1.67
42587--42753	87	1.9	86	88	1	253	41	10	13	33	1.79
43433--43984	182	3.0	183	88	1	822	26	16	13	43	1.84
58724--58783	17	4.0	15	73	20	54	75	1	11	11	1.13
58750--58801	20	2.5	20	84	12	61	76	1	7	13	1.07
58742--58788	13	3.5	13	75	18	51	78	0	6	14	0.93
58739--58799	27	2.2	28	83	13	74	75	1	9	13	1.12
59032--59125	37	2.7	36	78	17	92	58	6	3	31	1.39

Tables:   1

The End!