genome.fa.s7231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007231.1 Hibiscus syriacus cultivar Beakdansim tig00019141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157327

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3288--3324	15	2.4	16	90	4	58	13	10	5	70	1.32
13437--13499	24	2.6	23	85	10	72	79	0	15	4	0.90
13437--13509	7	10.3	7	72	12	51	79	0	13	6	0.92
13441--13494	17	3.1	18	82	10	67	81	0	12	5	0.85
13437--13496	11	5.1	11	80	15	59	80	0	15	5	0.88
13437--13496	18	3.3	18	78	19	70	80	0	15	5	0.88
14751--15322	135	4.2	134	77	7	516	32	22	14	31	1.93
15505--15578	3	25.0	3	79	8	80	29	4	1	64	1.20
16612--16736	62	2.0	62	87	3	180	20	16	22	40	1.92
16612--16720	31	3.5	31	96	0	191	18	17	22	42	1.89
17432--17473	21	2.0	21	90	0	66	26	23	26	23	2.00
22158--22211	19	3.0	19	66	23	53	55	0	0	44	0.99
22447--22498	19	2.6	21	78	6	63	59	1	1	36	1.19
24772--24813	14	2.9	14	92	3	66	52	0	0	47	1.00
24766--24814	14	3.5	13	86	8	53	53	2	0	44	1.12
25078--25104	3	9.0	3	100	0	54	33	0	0	66	0.92
25101--25128	6	4.7	6	100	0	56	17	0	14	67	1.22
25078--25128	18	2.8	18	83	16	54	25	0	7	66	1.18
26937--26986	24	2.1	24	84	0	64	42	22	22	14	1.88
26977--27030	21	2.5	22	81	6	65	37	27	18	16	1.93
27008--27052	23	2.0	23	86	8	65	31	24	26	17	1.97
31166--31196	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31338--31390	23	2.3	23	90	0	79	41	20	5	32	1.76
31616--31659	21	2.0	21	91	4	70	36	29	22	11	1.89
31621--31690	21	3.2	22	83	6	79	31	24	27	17	1.97
36754--36940	29	6.6	29	85	3	254	40	20	4	35	1.72
37672--37701	10	3.0	10	100	0	60	40	30	0	30	1.57
44107--44263	29	5.3	29	85	6	208	40	22	2	34	1.68
44271--44305	17	2.1	17	100	0	70	17	22	42	17	1.88
44258--44287	13	2.3	13	94	0	51	13	26	43	16	1.85
55590--55642	15	3.6	14	75	10	52	67	0	1	30	1.01
60701--60745	2	23.0	2	95	4	83	51	0	0	48	1.00
64222--64270	21	2.3	22	82	10	57	57	6	0	36	1.24
67484--68064	55	10.6	55	89	1	873	28	28	15	27	1.96
86973--87010	19	2.0	20	89	5	60	44	5	2	47	1.39
88519--88970	134	3.4	134	86	6	601	25	21	18	34	1.96
88532--88983	135	3.4	133	85	6	557	25	21	19	34	1.96
97205--97229	6	4.2	6	100	0	50	52	16	16	16	1.76
103487--103855	146	2.5	146	91	0	578	20	26	20	33	1.97
104437--104718	55	5.1	54	79	11	198	29	22	18	30	1.97
104537--105486	54	17.5	54	90	3	1252	22	26	20	31	1.98
105847--106048	36	5.6	36	73	8	124	23	17	21	37	1.94
107169--107528	125	2.9	123	82	4	436	21	27	18	32	1.97
108761--108867	45	2.4	46	77	12	116	11	17	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112809--112851	21	2.0	23	86	9	63	60	4	0	34	1.17
114228--114599	146	2.6	146	89	1	541	21	25	19	33	1.97
116392--116441	3	16.7	3	79	8	57	60	4	2	34	1.27
116392--116449	12	4.5	13	75	12	50	60	3	1	34	1.24
117120--117207	28	3.0	27	69	15	68	34	18	5	42	1.74
117280--117395	60	1.9	60	84	6	155	30	18	18	32	1.95
117677--117772	31	3.2	31	63	21	76	39	20	14	25	1.91
117610--117773	60	2.7	60	89	3	242	37	18	15	28	1.92
120668--120728	27	2.3	27	85	0	77	32	4	21	40	1.74
120680--120734	27	2.0	27	96	0	101	23	7	21	47	1.76
122798--122828	15	2.1	15	93	0	53	45	0	0	54	0.99
122983--123033	20	2.5	20	90	0	75	21	23	9	45	1.82
132197--132227	2	15.5	2	100	0	62	51	0	0	48	1.00
141682--141854	83	2.1	84	80	1	186	28	18	19	34	1.95
145233--145269	19	1.9	19	88	0	56	32	27	16	24	1.96
145500--145550	17	2.6	21	73	26	65	27	39	7	25	1.83
145510--145547	17	2.2	17	100	0	76	31	36	5	26	1.79
146197--146250	24	2.2	24	90	0	81	22	16	20	40	1.91
148682--148815	20	6.8	20	88	1	189	32	21	17	27	1.96
149565--149660	21	4.6	21	70	8	70	26	17	37	18	1.93
149565--149660	42	2.3	42	79	0	120	26	17	37	18	1.93
150136--150173	20	1.9	20	100	0	76	50	23	10	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150166--150230	20	3.2	20	84	0	76	35	24	20	20	1.96
150278--150315	20	1.9	20	94	0	67	13	21	18	47	1.82
150282--150356	32	2.3	34	90	4	118	14	21	20	44	1.87
150369--150416	20	2.4	20	92	0	78	16	20	25	37	1.93
152269--152374	20	5.4	20	84	3	99	45	22	16	15	1.85
153005--153051	21	2.2	21	80	0	58	34	19	21	25	1.96
153085--153130	19	2.4	19	85	3	56	21	17	30	30	1.96
153096--153132	19	1.9	19	94	0	65	21	16	29	32	1.95

Tables:   1

The End!