Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007236.1 Hibiscus syriacus cultivar Beakdansim tig00019159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81344

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9421--9455
18
1.9
18
88
0
52
31
2
31
34
1.73
10292--10338
23
2.0
23
88
8
69
40
10
8
40
1.70
18415--18509
38
2.5
38
94
0
172
26
9
8
55
1.60
19444--19547
55
1.9
55
89
0
163
37
7
24
30
1.83
21289--21403
32
3.6
32
80
0
113
34
15
15
33
1.90
21303--21422
64
1.9
64
85
0
168
33
16
17
32
1.93
21314--21427
32
3.6
32
80
0
129
31
17
18
32
1.94
22047--22132
31
2.8
31
85
0
118
30
15
5
48
1.68
28227--28299
26
2.9
24
80
13
85
43
4
1
50
1.29
28241--28364
54
2.3
53
80
5
133
43
3
0
52
1.23
28250--28353
27
4.0
23
74
17
64
42
2
0
53
1.22
34264--34302
14
2.8
14
84
0
51
35
28
12
23
1.91
46672--46759
44
2.0
44
95
0
158
51
19
7
21
1.72
48758--48810
26
2.0
26
100
0
106
22
11
22
43
1.85
50566--50591
2
13.0
2
100
0
52
50
0
0
50
1.00
53160--53199
19
2.0
21
85
9
57
45
0
5
50
1.23
54117--54196
40
2.0
40
92
0
133
43
10
7
38
1.66
55692--55735
20
2.2
20
100
0
88
38
4
40
15
1.68
68147--68180
17
1.9
18
88
5
52
26
5
11
55
1.58
70659--70709
18
2.7
20
79
8
63
31
0
7
60
1.25
71516--71555
19
2.1
19
100
0
80
32
10
15
42
1.79
72351--72408
29
2.0
29
89
0
89
13
36
27
22
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72451--72478
14
2.0
14
100
0
56
21
42
28
7
1.79
72465--72519
20
2.8
20
91
0
92
29
36
25
9
1.87
72445--72585
10
13.1
10
66
14
66
26
29
33
10
1.90
72521--72585
33
2.0
33
93
0
112
26
21
40
12
1.88
72591--72647
29
2.0
29
96
0
105
14
28
40
17
1.88
72707--72763
29
2.0
29
89
6
89
22
31
31
14
1.93
73537--73570
2
17.0
2
100
0
68
50
0
0
50
1.00
74733--74813
35
2.3
36
89
2
128
41
22
1
34
1.62
74746--74829
36
2.4
35
85
2
105
41
28
2
27
1.68
75311--75601
147
2.0
147
93
0
492
48
9
5
36
1.60
75758--75834
35
2.2
35
83
4
102
32
1
20
45
1.60
76704--76734
2
15.5
2
100
0
62
48
0
51
0
1.00

Tables:   1

The End!