genome.fa.s7239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007239.1 Hibiscus syriacus cultivar Beakdansim tig00019176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61456

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3729--3810	42	2.0	42	87	4	121	36	19	13	30	1.90
5220--5330	41	2.7	41	79	5	116	39	17	9	33	1.82
5367--5546	42	4.4	39	77	18	143	27	18	17	36	1.93
5388--5546	82	1.9	83	86	6	225	27	19	17	35	1.94
10811--11213	90	4.8	81	75	11	288	35	15	14	33	1.89
11400--11549	73	2.1	73	96	2	275	50	14	6	30	1.66
12303--12352	22	2.3	22	82	6	66	38	14	8	40	1.75
12903--13086	83	2.2	81	81	8	210	29	21	16	32	1.96
13078--13170	41	2.3	38	74	15	89	32	17	20	30	1.95
17627--17669	17	2.6	17	86	13	56	41	2	0	55	1.12
24396--24482	35	2.4	36	84	5	106	42	18	9	29	1.81
32832--32898	28	2.4	28	89	0	107	38	0	14	46	1.45
35665--36398	148	5.0	147	87	1	1035	35	22	14	27	1.94
35665--36393	295	2.5	295	90	1	1162	34	22	14	27	1.94
42066--42187	31	4.0	31	84	2	158	25	17	21	36	1.95
42066--42185	62	2.0	60	88	3	177	25	16	21	35	1.94
42769--42843	20	3.8	20	73	15	66	30	20	13	36	1.91
46713--46835	31	4.0	31	91	4	189	24	19	21	34	1.96
49170--49266	35	2.8	34	77	9	90	42	0	0	57	0.98
51050--51120	21	3.4	21	84	7	99	18	29	26	25	1.98
51633--51739	34	3.1	34	86	0	151	53	3	3	39	1.37
52142--52665	127	4.2	127	92	2	860	33	21	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52142--52664	252	2.1	253	93	1	890	33	21	23	21	1.97
57932--58281	112	3.1	112	90	0	540	44	14	16	25	1.85
59035--59082	23	2.1	23	84	0	60	39	14	8	37	1.76
60789--60820	6	5.5	6	92	7	57	53	0	0	46	1.00
60897--61059	84	2.0	82	87	2	236	46	12	15	25	1.81

Tables:   1

The End!