Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007243.1 Hibiscus syriacus cultivar Beakdansim tig00019193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78452

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4440--4564
63
2.0
61
89
7
191
55
12
4
28
1.54
4608--4666
3
19.3
3
89
10
93
64
0
0
35
0.94
9684--9735
3
18.0
3
92
7
90
34
0
0
65
0.93
9684--9735
17
3.0
17
97
2
95
34
0
0
65
0.93
11935--11971
6
6.2
6
87
0
56
21
0
29
48
1.50
15951--15980
2
15.0
2
100
0
60
50
0
0
50
1.00
17096--17174
23
3.4
23
94
0
122
60
20
10
8
1.55
22298--22339
2
21.0
2
100
0
84
50
0
0
50
1.00
23247--23284
2
19.0
2
100
0
76
50
0
0
50
1.00
23586--23686
2
50.5
2
100
0
202
50
0
0
49
1.00
24987--25031
23
2.0
23
86
0
63
37
4
0
57
1.19
26473--26746
151
1.8
152
85
0
388
44
12
9
33
1.75
27126--27154
10
3.0
10
95
5
51
37
0
0
62
0.96
27174--27204
2
15.5
2
100
0
62
51
48
0
0
1.00
27204--27237
2
17.0
2
100
0
68
50
0
0
50
1.00
27741--27769
10
3.0
10
95
5
51
37
0
0
62
0.96
26610--28435
615
3.0
613
88
7
2826
38
9
12
38
1.76
28130--28210
35
2.3
36
80
6
94
29
1
22
46
1.59
27222--28415
586
2.0
583
90
3
1855
38
8
13
39
1.76
28383--28435
2
26.5
2
100
0
106
50
0
0
49
1.00
29697--29782
41
2.2
39
84
10
113
51
10
10
27
1.69
31808--31859
15
3.3
15
72
15
50
30
11
26
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34397--34574
83
2.1
83
97
0
338
38
19
16
24
1.92
36442--36482
22
2.0
20
85
9
55
43
4
0
51
1.23
36475--36518
18
2.5
17
85
3
61
38
2
2
56
1.24
47550--47589
3
13.3
3
94
0
71
35
0
0
65
0.93
47989--48020
2
16.0
2
100
0
64
50
0
0
50
1.00
54336--54378
19
2.3
20
84
15
65
30
18
32
18
1.95
58473--58930
45
10.4
45
77
8
462
16
33
10
39
1.83
58526--58977
87
5.2
87
86
4
635
17
32
11
38
1.86
58647--58718
24
3.1
24
62
18
62
13
36
9
40
1.78
58623--58692
21
3.2
21
64
18
52
18
35
11
34
1.87
59015--59294
45
6.2
45
81
0
272
16
26
15
42
1.87
58472--59294
90
9.4
90
80
7
431
16
30
12
40
1.85
59372--59461
44
2.0
44
97
0
153
21
33
13
32
1.92
59422--59637
108
2.0
107
95
2
389
19
25
20
34
1.96
65319--65375
30
1.9
30
85
0
78
29
15
5
49
1.67
67990--68134
56
2.6
54
77
6
155
28
17
12
42
1.85
71727--71785
20
3.0
20
92
7
102
33
20
18
27
1.96

Tables:   1

The End!