genome.fa.s7244.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007244.1 Hibiscus syriacus cultivar Beakdansim tig00019194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106743

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2517--2574	29	2.0	29	86	0	80	41	15	6	36	1.74
10145--10377	112	2.1	113	93	0	396	36	12	16	35	1.85
16359--16397	20	2.0	20	85	9	55	48	2	20	28	1.62
22063--22124	26	2.4	26	97	0	115	41	8	19	30	1.80
22986--26243	4	817.0	4	93	3	5315	26	1	23	48	1.61
27706--27731	2	13.0	2	100	0	52	50	0	0	50	1.00
27997--28045	2	24.5	2	91	0	80	48	2	2	46	1.25
28080--28109	2	15.0	2	100	0	60	50	0	0	50	1.00
28107--28154	4	12.0	4	100	0	96	25	0	25	50	1.50
31265--31455	60	3.2	58	76	11	163	31	20	5	41	1.75
32671--32725	20	2.8	20	80	0	74	38	12	16	32	1.86
34723--34850	26	5.0	24	71	17	82	71	3	4	21	1.19
34740--34873	11	10.9	12	67	21	55	70	2	3	23	1.18
35053--35078	12	2.2	12	100	0	52	65	0	19	15	1.27
35121--35173	2	26.5	2	100	0	106	50	0	0	49	1.00
35369--35413	2	22.5	2	100	0	90	51	0	0	48	1.00
35540--35584	12	3.7	12	81	3	54	66	0	4	28	1.11
36155--36259	37	2.8	37	86	0	147	29	15	14	40	1.86
36881--37328	105	4.4	106	87	8	656	21	18	25	34	1.96
37094--37249	43	3.4	43	67	23	113	22	19	24	33	1.97
36953--37328	199	1.9	199	91	2	621	22	17	25	34	1.96
36953--37254	94	3.1	94	84	10	433	22	17	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38811--38853	15	2.8	16	79	17	54	0	9	6	83	0.80
38810--38854	18	2.5	17	82	13	54	0	8	6	84	0.78
42108--42144	19	1.9	19	89	10	58	67	0	24	8	1.17
43318--43358	12	3.4	12	81	18	50	82	2	7	7	0.91
43294--43369	24	3.1	23	75	17	73	78	3	3	13	1.02
43386--43412	2	13.5	2	100	0	54	51	0	0	48	1.00
43875--43928	2	27.0	2	100	0	108	50	0	0	50	1.00
43937--43977	11	3.6	11	87	6	55	65	4	4	24	1.32
43995--44046	25	2.0	28	88	11	83	69	1	0	28	0.99
44061--44105	12	3.7	12	81	3	54	66	0	4	28	1.11
44604--44704	37	2.7	37	85	0	121	31	14	10	42	1.81
54472--54525	21	2.6	21	85	2	74	31	11	20	37	1.88
57123--57178	2	28.0	2	100	0	112	50	0	0	50	1.00
57178--57213	2	18.0	2	100	0	72	0	0	50	50	1.00
59071--59100	15	2.0	15	93	0	51	33	0	3	63	1.11
61369--61645	59	4.7	59	87	3	387	32	19	12	35	1.89
61982--62156	95	1.9	94	85	1	242	29	25	12	33	1.92
61975--62198	94	2.4	95	78	3	245	29	24	12	33	1.92
66360--66407	24	2.0	24	87	0	69	22	16	14	45	1.84
68306--68756	59	7.6	59	89	1	654	31	19	13	34	1.91
69089--69143	22	2.7	20	81	10	74	29	30	12	27	1.93
69090--69311	93	2.4	95	83	3	270	27	26	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71979--72020	3	14.0	3	94	0	75	2	30	0	66	1.04
72677--72832	31	5.0	31	96	1	269	37	23	19	19	1.94
73007--73044	20	2.0	20	89	5	60	31	10	7	50	1.66
73008--73054	20	2.2	20	85	7	58	36	12	6	44	1.68
73482--73526	21	2.1	21	87	0	63	15	24	28	31	1.96
76855--77010	31	5.0	31	96	1	269	37	23	19	19	1.94
77185--77222	20	2.0	20	89	5	60	31	10	7	50	1.66
77186--77232	20	2.2	20	85	7	58	36	12	6	44	1.68
77660--77704	21	2.1	21	87	0	63	15	24	28	31	1.96
78894--78938	20	2.3	19	85	11	63	40	11	31	17	1.85
79591--79671	40	2.1	39	88	2	117	30	7	9	51	1.62
84597--84645	20	2.4	20	82	3	62	36	6	18	38	1.76
85913--85969	25	2.3	25	90	0	96	52	8	10	28	1.65
87046--87092	23	2.0	23	91	0	76	27	38	14	19	1.91
87344--87395	21	2.5	20	75	6	59	67	3	1	26	1.18
87585--87616	8	4.0	8	100	0	64	25	0	0	75	0.81
87489--88474	341	2.9	341	90	3	1524	43	7	4	44	1.54
88911--88950	16	2.5	16	84	11	55	32	2	0	65	1.06
89217--89270	15	3.6	15	75	9	56	68	1	0	29	1.00
89243--89347	41	2.6	41	82	10	128	72	0	0	25	0.97
89278--89349	12	5.5	13	71	22	62	73	1	0	25	0.91
89247--89349	24	4.2	23	73	26	79	72	0	0	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89298--89336	16	2.5	15	92	8	69	69	0	0	30	0.89
89294--89344	20	2.6	21	81	12	72	72	0	0	27	0.85
91794--91824	16	1.9	16	93	0	53	35	3	0	61	1.12
97542--97584	23	1.9	23	85	4	61	11	11	11	65	1.49
106490--106555	20	3.2	19	78	16	69	42	16	18	22	1.89

Tables:   1

The End!