genome.fa.s7245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007245.1 Hibiscus syriacus cultivar Beakdansim tig00019199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74015

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876--2945	17	4.1	17	83	5	88	38	8	12	40	1.74
2876--2945	34	2.1	34	86	5	97	38	8	12	40	1.74
3002--3043	17	2.5	17	84	0	57	47	9	11	30	1.72
5325--5365	21	1.9	22	90	5	66	58	19	7	14	1.59
7019--7073	17	3.2	17	86	0	74	40	10	10	38	1.76
10905--10943	19	2.0	20	85	5	53	71	15	10	2	1.23
11687--11757	29	2.3	31	88	7	101	32	0	2	64	1.08
18304--18512	43	5.0	43	72	9	162	32	19	24	23	1.98
22411--22481	32	2.3	32	80	9	85	43	4	5	46	1.46
27328--27358	2	15.5	2	100	0	62	48	0	0	51	1.00
27641--27678	20	1.9	20	88	0	58	55	2	0	42	1.14
28599--28626	2	14.0	2	100	0	56	50	0	0	50	1.00
42733--42769	17	2.2	17	90	0	56	10	16	48	24	1.77
42757--42797	14	2.9	14	92	0	64	2	9	58	29	1.43
42809--42879	10	7.3	9	74	12	61	33	26	25	14	1.94
42809--42879	20	3.6	20	76	14	76	33	26	25	14	1.94
50513--50640	62	2.1	62	100	0	256	46	13	10	28	1.77
54373--54422	15	3.4	15	68	15	50	52	6	4	38	1.45
54370--54433	29	2.2	29	94	0	110	53	9	3	34	1.49
56717--56780	24	2.7	24	97	0	119	32	23	21	21	1.98
60496--60569	18	4.4	18	68	16	59	16	17	44	21	1.86
60487--60565	31	2.5	31	83	0	95	18	18	41	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65207--65255	19	2.5	19	86	3	62	36	32	12	18	1.88
65243--65282	20	2.0	20	85	0	53	30	27	10	32	1.89
65328--65414	20	4.3	20	72	13	72	32	20	11	35	1.89
65309--65414	40	2.7	40	85	2	124	31	22	11	34	1.90
66345--66398	24	2.2	24	93	0	90	24	18	16	40	1.90
68932--68996	20	3.2	20	82	4	69	47	20	18	13	1.82
69087--69121	16	2.2	16	89	0	52	65	14	0	20	1.26
69553--69594	19	2.2	19	100	0	84	42	28	19	9	1.82
70542--70624	21	4.0	21	88	0	130	25	18	37	19	1.94
70529--70625	42	2.3	42	90	0	149	23	17	37	21	1.94
71046--71095	21	2.4	21	89	0	73	32	32	14	22	1.93
72725--72782	19	3.0	19	87	5	80	50	18	17	13	1.79
72725--72789	20	3.3	20	84	2	87	49	18	16	15	1.80
73341--73379	20	2.0	20	85	5	53	43	10	12	33	1.77

Tables:   1

The End!