genome.fa.s7247.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007247.1 Hibiscus syriacus cultivar Beakdansim tig00019201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53529

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5712--5810	31	3.2	31	81	2	99	19	14	11	55	1.68
5725--5810	32	2.7	31	82	3	100	18	13	10	56	1.65
5871--5931	31	1.9	32	83	9	81	50	3	11	34	1.55
13645--13676	14	2.3	14	100	0	64	59	21	6	12	1.55
15809--15847	14	2.8	14	80	0	51	30	0	20	48	1.50
16699--16796	30	3.3	30	82	0	124	35	18	23	22	1.95
16769--16838	29	2.4	29	90	0	113	40	18	27	14	1.89
17889--17938	23	2.2	23	92	0	82	28	6	40	26	1.79
19250--19336	10	8.1	10	69	14	57	24	27	39	9	1.85
19254--19340	33	2.6	33	90	0	129	25	27	37	9	1.86
30212--30307	35	2.7	35	90	0	147	39	28	1	31	1.64
31062--31157	35	2.7	35	86	0	102	32	1	26	40	1.63
33894--33949	29	1.9	29	88	0	85	12	37	26	23	1.90
33965--34027	33	1.9	33	83	0	81	11	38	25	25	1.89
34017--34073	14	3.6	14	73	24	51	8	28	38	24	1.85
35686--35716	15	2.1	15	100	0	62	25	6	22	45	1.76
42315--42398	29	2.9	29	96	0	150	19	32	32	16	1.94
42437--42477	20	2.0	20	100	0	82	19	4	60	14	1.51
42995--43038	21	2.1	21	91	0	70	29	0	15	54	1.42
43015--43077	28	2.2	30	91	5	103	31	0	11	57	1.34
43567--43596	15	1.9	16	93	6	53	43	0	13	43	1.43
43881--43939	26	2.3	25	75	18	66	47	8	3	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45368--45458	45	2.0	47	87	8	134	46	12	0	41	1.41
45389--45527	41	3.3	40	76	14	111	46	11	0	41	1.45
45780--45830	24	2.1	25	88	3	77	29	33	11	25	1.91
45941--45992	23	2.3	23	100	0	104	23	7	44	25	1.79
46008--46117	29	3.8	29	100	0	220	23	29	30	16	1.96
46131--46260	41	3.1	41	65	20	115	16	32	26	23	1.96
46205--46315	55	2.0	55	98	0	213	15	34	21	28	1.94
46122--46538	139	3.0	139	98	0	816	17	33	24	24	1.96
46344--46454	55	2.0	55	98	0	213	17	34	20	27	1.95
46409--46540	41	3.2	41	66	19	119	16	31	28	23	1.96
48092--48148	21	2.8	20	73	19	55	56	5	0	38	1.22
48760--48806	23	2.0	23	100	0	94	34	4	8	53	1.51
49555--49612	29	2.0	29	90	3	91	37	8	0	53	1.32
49748--49817	29	2.4	29	75	15	72	48	4	12	34	1.61
50201--50236	4	9.0	4	93	0	63	25	72	0	2	0.98
50843--50868	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!