genome.fa.s7248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007248.1 Hibiscus syriacus cultivar Beakdansim tig00019204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103770

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6614--6667	22	2.5	22	96	0	99	37	24	27	11	1.89
7057--7108	23	2.4	21	85	14	79	36	15	13	34	1.87
7065--7114	23	2.2	23	100	0	100	36	20	14	30	1.91
8054--8096	8	5.4	8	82	0	50	39	23	9	27	1.85
8054--8096	16	2.7	16	81	0	59	39	23	9	27	1.85
10481--10631	58	2.5	57	77	10	142	31	23	3	40	1.73
10769--10923	60	2.6	60	84	4	215	43	5	20	30	1.75
13683--13720	20	1.9	20	88	0	58	10	26	36	26	1.89
13703--13764	22	2.8	22	82	9	72	19	24	35	20	1.96
20237--20376	36	3.9	36	96	0	253	16	22	14	46	1.83
21480--21650	78	2.2	78	87	2	245	32	2	38	27	1.70
29800--30359	209	2.6	210	92	2	892	51	8	12	28	1.68
30399--30472	7	10.7	7	77	11	64	18	1	28	51	1.55
30400--30453	20	2.6	21	85	5	74	18	1	25	53	1.54
30547--30591	23	1.9	24	90	4	74	42	2	6	48	1.41
30958--31029	21	3.5	21	84	5	94	25	0	20	54	1.45
31129--31165	15	2.5	14	91	8	56	43	2	2	51	1.30
30456--32613	532	3.9	572	81	10	2135	36	9	11	42	1.74
31464--31488	13	1.9	13	100	0	50	44	32	8	16	1.76
31572--31666	49	1.9	49	85	4	129	34	7	7	50	1.58
31650--31692	13	3.3	13	93	0	77	41	0	6	51	1.29
31673--31723	20	2.4	21	74	9	59	41	7	5	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32151--32190	2	20.0	2	100	0	80	50	0	0	50	1.00
32249--32304	22	2.4	22	85	8	67	53	0	5	41	1.24
31015--32634	531	3.0	531	88	4	2223	36	9	11	42	1.74
32597--32653	21	2.8	21	86	7	82	21	0	26	52	1.47
32738--32780	17	2.5	17	88	3	59	44	2	4	48	1.36
32729--32760	13	2.5	13	94	0	55	40	0	9	50	1.35
32840--32872	2	16.5	2	100	0	66	51	48	0	0	1.00
33087--33127	20	2.1	20	86	4	57	24	26	2	46	1.65
32876--33426	273	2.0	276	98	1	1072	39	14	11	34	1.82
33360--33400	20	2.1	20	86	4	57	24	26	2	46	1.65
33682--33722	20	2.1	20	86	4	57	24	26	2	46	1.65
33152--33763	322	1.9	319	98	1	1179	39	14	11	34	1.83
34047--34123	38	2.0	39	87	2	111	58	6	2	32	1.37
35033--35112	41	2.0	41	87	5	117	22	13	17	46	1.83
40779--41053	139	2.0	139	96	0	505	27	18	16	37	1.92
45312--45592	139	2.0	139	97	0	526	27	19	15	37	1.92
47410--47464	21	2.6	21	88	0	83	43	20	32	3	1.69
47799--47927	44	2.9	44	80	4	152	32	24	12	30	1.92
47780--47935	44	3.6	43	79	5	127	34	22	12	30	1.91
48848--48898	2	25.5	2	100	0	102	49	0	0	50	1.00
49861--50009	60	2.5	60	87	0	208	39	22	15	22	1.91
49861--50021	30	5.4	30	73	5	110	37	21	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52245--52276	8	4.1	8	92	8	57	12	21	12	53	1.71
52245--52276	15	2.1	16	94	5	57	12	21	12	53	1.71
52902--53032	47	2.8	47	88	0	190	32	18	17	31	1.94
53033--53367	126	2.7	126	88	1	485	26	17	25	30	1.97
53461--53533	38	1.9	38	86	8	105	39	8	19	32	1.81
54338--54407	34	2.1	32	89	5	104	22	30	15	31	1.95
55953--55992	21	1.9	21	89	0	62	17	27	35	20	1.95
58978--59047	35	2.0	35	100	0	140	31	25	8	34	1.86
61183--61218	2	19.0	2	88	11	58	50	0	0	50	1.00
61697--61770	33	2.2	33	100	0	148	28	13	12	45	1.79
62097--62216	47	2.6	47	87	0	177	32	17	18	31	1.94
63004--63258	30	8.5	30	81	6	284	39	25	14	20	1.91
63004--63276	90	3.0	90	84	5	331	39	25	15	20	1.91
66094--66552	126	3.6	125	85	4	507	26	19	24	28	1.99
66648--66720	37	1.9	38	88	2	112	38	9	19	32	1.84
66649--66720	38	1.9	37	88	2	99	38	9	19	31	1.84
66801--66863	32	2.0	32	90	0	99	34	25	12	26	1.92
66808--66889	32	2.6	32	86	0	101	32	25	12	29	1.92
67943--67993	24	2.2	22	86	6	66	1	17	7	72	1.18
68114--68156	18	2.4	19	80	11	54	37	6	2	53	1.41
68791--68861	20	3.5	20	72	14	74	54	5	2	36	1.38
69189--69337	76	2.0	76	81	7	178	29	2	10	57	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70043--70120	7	10.9	7	76	4	66	21	2	1	74	1.01
70045--70120	36	2.1	36	82	4	91	22	2	1	73	1.03
74020--74095	19	3.9	19	66	16	57	27	1	11	59	1.41
74002--74161	58	2.7	58	89	2	223	29	0	14	55	1.44
74778--74855	19	4.4	18	75	18	74	24	2	0	73	0.96
74793--74857	8	8.6	8	76	17	52	26	1	0	72	0.94
74777--74836	26	2.3	25	80	8	66	21	3	0	75	0.95
74790--74855	34	1.9	34	82	11	82	24	3	0	72	0.98
76096--76436	30	11.4	30	78	6	325	37	28	14	19	1.91
76133--76421	60	4.8	60	93	0	470	38	26	14	19	1.91
80170--80238	20	3.5	19	77	15	68	55	5	1	37	1.33
81464--81638	30	5.8	30	82	4	201	40	24	13	21	1.90
81464--81638	90	1.9	90	84	2	235	40	24	13	21	1.90
81800--81824	3	8.3	3	100	0	50	32	0	0	68	0.90
85638--85839	68	3.0	68	91	0	314	27	12	12	47	1.77
85926--85990	32	2.0	33	90	3	105	29	6	16	47	1.71
87224--87287	26	2.5	26	100	0	128	46	21	28	3	1.66
88126--88164	16	2.4	16	100	0	78	17	35	25	20	1.95
88751--89037	60	4.8	60	93	0	461	36	27	15	20	1.93
88743--89052	30	10.4	30	78	6	317	35	28	16	20	1.93
90307--90347	2	20.5	2	100	0	82	48	0	0	51	1.00
91887--92016	30	4.4	29	75	7	100	40	29	11	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96635--96662	13	2.2	13	100	0	56	32	21	21	25	1.98
98864--99419	197	2.8	198	82	7	628	38	14	11	35	1.83
99689--99772	31	2.8	29	78	7	87	29	14	15	40	1.87
99710--99785	31	2.4	31	86	2	98	32	17	11	38	1.86
100011--100048	19	2.0	19	94	0	67	42	18	0	39	1.50
102621--102646	1	26.0	1	100	0	52	0	0	0	100	0.00

Tables:   1

The End!