genome.fa.s725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000725.1 Hibiscus syriacus cultivar Beakdansim tig00001406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59351

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652--690	20	2.1	20	86	13	57	15	7	43	33	1.75
806--845	20	2.0	21	90	5	64	25	17	22	35	1.95
1360--1404	2	23.0	2	95	4	83	51	0	0	48	1.00
5060--5234	88	2.0	89	84	7	232	21	22	24	32	1.98
8771--8885	58	2.0	58	89	3	178	33	14	19	33	1.92
11659--11703	21	2.1	21	91	0	72	46	2	13	37	1.55
16948--16979	15	2.1	15	94	0	55	6	25	15	53	1.65
18177--18245	36	1.9	35	88	2	102	47	15	4	31	1.65
21315--21608	45	6.6	45	88	1	439	31	22	6	39	1.80
21315--21608	90	3.3	90	94	0	484	31	22	6	39	1.80
26142--26175	17	1.9	18	94	5	61	64	11	11	11	1.50
32601--32630	2	15.0	2	92	0	51	50	3	46	0	1.18
33141--33292	20	7.4	20	82	5	135	34	24	16	25	1.95
33157--33286	62	2.1	61	81	1	143	34	24	16	24	1.95
33460--33501	22	1.9	22	95	0	75	21	45	16	16	1.86
33766--33824	20	3.0	20	87	0	73	16	18	22	42	1.89
33961--34015	25	2.2	24	78	15	58	20	9	18	52	1.71
35138--35182	18	2.5	18	88	0	72	26	44	15	13	1.83
35664--35705	20	2.1	20	86	0	57	35	26	21	16	1.94
35675--35738	19	3.3	19	82	2	74	42	18	21	17	1.89
35707--35784	19	4.4	19	76	18	87	47	20	19	12	1.82
35796--35886	14	5.9	14	72	20	74	12	17	21	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35791--35902	33	3.4	33	95	1	199	12	18	21	47	1.81
35812--35945	20	7.5	19	69	17	83	14	20	19	45	1.85
36309--36396	41	2.1	42	85	2	124	21	43	14	20	1.88
37812--37847	14	2.6	14	90	0	54	30	0	22	47	1.52
37972--38049	19	4.7	15	79	17	52	46	19	20	14	1.84
37982--38049	19	3.8	19	81	14	92	47	17	20	14	1.83
38076--38163	20	4.4	20	78	5	106	15	20	23	39	1.91
38056--38143	40	2.4	36	81	12	99	15	19	21	43	1.88
38371--38482	20	5.5	20	74	5	73	23	18	19	38	1.93
38446--38498	19	2.7	20	80	8	63	22	22	16	37	1.94
38688--38721	12	2.9	12	86	4	52	17	41	5	35	1.74
39262--39315	24	2.2	24	93	0	90	22	14	20	42	1.88
41789--41886	19	5.7	19	67	22	81	42	20	21	15	1.88
41790--41889	33	3.0	33	91	2	157	41	20	21	18	1.91
41897--41953	14	3.7	14	70	20	51	10	24	21	43	1.83
41885--41962	33	2.4	32	91	4	129	14	23	17	44	1.85
43448--43595	42	3.6	41	77	6	156	20	19	37	22	1.95
43478--43647	82	2.1	80	92	6	281	23	17	38	20	1.93
43487--43617	41	3.2	41	76	5	149	20	19	38	22	1.94
43861--44034	84	2.0	89	86	8	250	48	17	12	21	1.79
45725--45808	33	2.7	29	89	9	114	38	21	27	13	1.90
45791--45836	19	2.4	19	100	0	92	47	21	19	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46431--46544	20	5.7	20	83	6	113	24	19	24	31	1.98
46431--46547	61	1.9	61	85	0	162	23	18	23	33	1.97
46431--46565	61	2.2	61	81	2	155	22	20	23	32	1.98
46615--46668	21	2.6	21	100	0	108	29	33	16	20	1.95
47825--47849	8	3.1	8	100	0	50	76	0	12	12	1.04
51060--51087	2	14.0	2	100	0	56	50	0	0	50	1.00
52485--52691	88	2.4	88	82	0	261	27	19	20	32	1.97
52657--53222	33	17.0	33	89	1	837	20	20	19	39	1.93
52662--53222	134	4.2	134	90	1	851	20	20	19	38	1.93

Tables:   1

The End!