Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007250.1 Hibiscus syriacus cultivar Beakdansim tig00019207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63004
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:1443 original size:23 final size:21
Alignment explanation
Indices: 1394--1446 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
1384 TGAATTGCTC
* *
1394 AAGAAAATA-AGAAAGGATTT
1 AAGAAAATAGAGAAAAGATTG
1414 AAG-AAATAGAGAAGATAGATTG
1 AAGAAAATAGAGAA-A-AGATTG
1436 AAGAAAATAGA
1 AAGAAAATAGA
1447 ATCATAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 5 0.19
20 7 0.26
21 1 0.04
22 7 0.26
23 7 0.26
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (21 bp):
AAGAAAATAGAGAAAAGATTG
Found at i:4782 original size:3 final size:3
Alignment explanation
Indices: 4774--4799 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4764 GGCTTCTCAT
4774 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
4800 TACCCCATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:9008 original size:2 final size:2
Alignment explanation
Indices: 8933--8992 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
8923 AAAATCATAC
8933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8975 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
8993 TATCTTAATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11151 original size:6 final size:6
Alignment explanation
Indices: 11140--11173 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
11130 GTATAACATC
11140 TCTAAA TCTAAA TCTAAA TCTAAA TCTAAA TCTA
1 TCTAAA TCTAAA TCTAAA TCTAAA TCTAAA TCTA
11174 TCTCTTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (6 bp):
TCTAAA
Found at i:17083 original size:57 final size:57
Alignment explanation
Indices: 16991--17102 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 57
16981 GGCAATTCTT
*
16991 GATTTTCTCGCGAAATTAGTTTGGTGTATCCAACCAGACTGACGTTCTGCTGCAGTC
1 GATTTTCTCGCGAAATCAGTTTGGTGTATCCAACCAGACTGACGTTCTGCTGCAGTC
*
17048 GATTTTCTCGCGAAATCAGTTTGGTGTATCGAACCAGACTGACGTTCTGCTGCAG
1 GATTTTCTCGCGAAATCAGTTTGGTGTATCCAACCAGACTGACGTTCTGCTGCAG
17103 CCGTGAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.32
Consensus pattern (57 bp):
GATTTTCTCGCGAAATCAGTTTGGTGTATCCAACCAGACTGACGTTCTGCTGCAGTC
Found at i:20670 original size:30 final size:30
Alignment explanation
Indices: 20634--20736 Score: 188
Period size: 30 Copynumber: 3.4 Consensus size: 30
20624 GCTTAATTCT
20634 CATTTTGGTCACTTATGTTATCGACTGTTA
1 CATTTTGGTCACTTATGTTATCGACTGTTA
*
20664 CATTTTGGTCACTTATGTTATCGATTGTTA
1 CATTTTGGTCACTTATGTTATCGACTGTTA
*
20694 CATTTTGGTTACTTATGTTATCGACTGTTA
1 CATTTTGGTCACTTATGTTATCGACTGTTA
20724 CATTTTGGTCACT
1 CATTTTGGTCACT
20737 AAGTCGTTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.49
Consensus pattern (30 bp):
CATTTTGGTCACTTATGTTATCGACTGTTA
Found at i:23563 original size:13 final size:13
Alignment explanation
Indices: 23545--23571 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23535 TTACAGACGC
23545 GCATATGAAGACT
1 GCATATGAAGACT
23558 GCATATGAAGACT
1 GCATATGAAGACT
23571 G
1 G
23572 TTCAACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:24181 original size:30 final size:31
Alignment explanation
Indices: 24150--24209 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
24140 TTAATTGAAA
* *
24150 TTAGAGATCAAAATGATATTTTATCTAAAAT
1 TTAGAGATCAAAATGATACTTCATCTAAAAT
* * *
24181 TTAGGGGTCAAATTGATACTTCATCTAAA
1 TTAGAGATCAAAATGATACTTCATCTAAA
24210 GTTTGAAGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (31 bp):
TTAGAGATCAAAATGATACTTCATCTAAAAT
Found at i:31413 original size:20 final size:20
Alignment explanation
Indices: 31330--31422 Score: 71
Period size: 20 Copynumber: 4.5 Consensus size: 20
31320 GTATGAACAA
*
31330 TATCGATACTCGATGAGAGCAG
1 TATCGATACT--ATGAGAGTAG
* * **
31352 TATCCATACTAGGTTAGTAG
1 TATCGATACTATGAGAGTAG
31372 TATCGATACCTA-GCAAGAGTAG
1 TATCGATA-CTATG--AGAGTAG
*
31394 TATCGATACTATGTGAGTAG
1 TATCGATACTATGAGAGTAG
*
31414 TAACGATAC
1 TATCGATAC
31423 CAAGTGCACA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
20 28 0.49
21 6 0.11
22 23 0.40
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (20 bp):
TATCGATACTATGAGAGTAG
Found at i:38038 original size:19 final size:20
Alignment explanation
Indices: 38011--38052 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
38001 CGAATAATTG
* *
38011 AATCGAATATAATAT-TTAA
1 AATCAAATATAAAATCTTAA
38030 AATCAAATATAAAATCTTAA
1 AATCAAATATAAAATCTTAA
38050 AAT
1 AAT
38053 TAATTTACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (20 bp):
AATCAAATATAAAATCTTAA
Found at i:39845 original size:13 final size:13
Alignment explanation
Indices: 39781--39845 Score: 78
Period size: 13 Copynumber: 5.0 Consensus size: 13
39771 GTCATAAATC
*
39781 TATGACGCGCATT
1 TATGACGCTCATT
*
39794 TATGACACTCATT
1 TATGACGCTCATT
39807 TATGACGCAT-ATT
1 TATGACGC-TCATT
*
39820 TATGACGCGCATT
1 TATGACGCTCATT
*
39833 TATGATGCTCATT
1 TATGACGCTCATT
39846 GCGCGTCATT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
13 43 0.98
14 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (13 bp):
TATGACGCTCATT
Found at i:45287 original size:40 final size:40
Alignment explanation
Indices: 45243--45318 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
45233 TTTGATATAG
45243 TGCCTTTGCATCTTTGATTGACACATTTGTTTGAAGAATA
1 TGCCTTTGCATCTTTGATTGACACATTTGTTTGAAGAATA
45283 TGCCTTTGCATCTTTGATTGACACATTTGTTTGAAG
1 TGCCTTTGCATCTTTGATTGACACATTTGTTTGAAG
45319 TTCTTGCTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (40 bp):
TGCCTTTGCATCTTTGATTGACACATTTGTTTGAAGAATA
Found at i:46455 original size:6 final size:6
Alignment explanation
Indices: 46446--46747 Score: 104
Period size: 6 Copynumber: 51.7 Consensus size: 6
46436 GAGGAGGAAA
* * * * *
46446 AAGAAG AAGAAG AAGAGG AAGAGG AAGAGG AAGGAG -AGAAG AGGAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* ** * * * * * *
46493 AGGAGAG GGGAGG AAGAGG GAG-GG AAGAGG AAG-AG AAG-AG AGGAAG
1 AAGA-AG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * * * *
46539 -AGAAG AGGAA- AGGAAG AGGAAG AGGAAG -AGAAG AGGAAG AGGAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * * * * *
46584 AGGAAG -AGAAG AGGAAG AGGAAG AGGAAG AGGAAG AGGAA- AGGAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * * * * *
46630 -AGAAG AGGAAG AGGAAG AGGAAG AGGAAG -AGGAG AGGAAG AGGAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * * * * * *
46676 AGGAAG AGGAAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG
1 AAGAAG AAGAA-G AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* *
46725 AAGAAG AGGAAG AGAGAGG AAGA
1 AAGAAG AAGAAG A-AGAAG AAGA
46748 TGAAATGAAA
Statistics
Matches: 252, Mismatches: 31, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
5 45 0.18
6 194 0.77
7 13 0.05
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (6 bp):
AAGAAG
Found at i:46546 original size:46 final size:47
Alignment explanation
Indices: 46430--46747 Score: 417
Period size: 46 Copynumber: 6.9 Consensus size: 47
46420 ATAGAAAGAG
* ** * *
46430 GAGGAAGAGGAGGAAAAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAA
1 GAGGAAGAGGAAGAGGAAG-AGGAGAGGAAGAGGAAGAGGAAGAGGAA
* *
46478 GGAGAGAAGAGGAAGAGG-AGAGGGGAGGAAGAGGGAG-GGAAGAGGAA
1 -GAG-GAAGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGAGGAA
* *
46525 GAGAAGAGAGGAAGA-GAAGAGGAAAGGAAGAGGAAGAGGAAGA-GAA
1 GAGGA-AGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGAGGAA
*
46571 GAGGAAGAGGAAGAGGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAA
1 GAGGAAGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGAGGAA
46618 GAGGAA-AGGAAGA-GAAGAGGAAGAGGAAGAGGAAGAGGAAGAGG-A
1 GAGGAAGAGGAAGAGGAAGAGG-AGAGGAAGAGGAAGAGGAAGAGGAA
46663 GAGGAAGAGGAAGAGGAAGAGGA-AGGAAGAGGAAGAGGAAGAGGAA
1 GAGGAAGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGAGGAA
46709 GAGGAAGAGGAAGAGGAAGA--AGAGGAAGA-G-AGAGGAAGA
1 GAGGAAGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGA
46748 TGAAATGAAA
Statistics
Matches: 243, Mismatches: 15, Indels: 28
0.85 0.05 0.10
Matches are distributed among these distances:
43 9 0.04
44 2 0.01
45 52 0.21
46 120 0.49
47 32 0.13
48 13 0.05
49 5 0.02
50 10 0.04
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (47 bp):
GAGGAAGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGAGGAA
Found at i:46616 original size:69 final size:70
Alignment explanation
Indices: 46430--46752 Score: 418
Period size: 69 Copynumber: 4.7 Consensus size: 70
46420 ATAGAAAGAG
* ** *
46430 GAGGAAGAGGAGGAAAAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGGAGAGAAGAGGAAGAG
1 GAGGAAGAGGAAGAGGAAG-AGAAGAGGAAGAGGAAGAGGAAGAGGAA--AG-GAAGAGGAAGAG
*
46495 G-AGAGG-G
62 GAAGAGGAA
* *
46502 GAGGAAGAGGGAG-GGAAGAGGAAGAGAAGAGAGGAAGA-GAAGAGGAAAGGAAGAGGAAGAGGA
1 GAGGAAGAGGAAGAGGAAGA-GAAGAGGA-AGAGGAAGAGGAAGAGGAAAGGAAGAGGAAGAGGA
46565 AGA-GAA
64 AGAGGAA
46571 GAGGAAGAGGAAGAGGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAA-AGGAAGA-GAA
1 GAGGAAGAGGAAGAGGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAA-AGGAAGAGGAAGAGGAA
46634 GAGGAA
65 GAGGAA
*
46640 GAGGAAGAGGAAGAGGAAGAGGAGAGGAAGAGGAAGAGGAAGAGG-AAGGAAGAGGAAGAGGAAG
1 GAGGAAGAGGAAGAGGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAAAGGAAGAGGAAGAGGAAG
46704 AGGAA
66 AGGAA
*
46709 GAGGAAGAGGAAGAGG-A-AGAAGAGGAAGA-G-AGAGGAAGATGAAA
1 GAGGAAGAGGAAGAGGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAAA
46753 TGAAAAAGGA
Statistics
Matches: 228, Mismatches: 12, Indels: 28
0.85 0.04 0.10
Matches are distributed among these distances:
65 10 0.04
66 3 0.01
67 16 0.07
68 37 0.16
69 112 0.49
70 12 0.05
71 18 0.08
72 20 0.09
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (70 bp):
GAGGAAGAGGAAGAGGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAAAGGAAGAGGAAGAGGAAG
AGGAA
Found at i:55620 original size:131 final size:131
Alignment explanation
Indices: 55399--55653 Score: 332
Period size: 131 Copynumber: 1.9 Consensus size: 131
55389 ATTTCATCTC
* * *
55399 AAAATTCAATATTGATTCGAGTGAAAACGATAATAACTAATGATTTCCAATCAAGAATAAATAAA
1 AAAAATCAATATTGATTCGAGAGAAAACGATAATAACGAATGATTTCCAATCAAGAATAAATAAA
* * * *
55464 CTCTCATTAATTACAACAATCATTTATTACTCCAATCGAAATGAAGAGATGTCACTATTATGTCT
66 CTCTCATGAATTACAACAATCATTTATTACTCCAAACGAAATGAAAAGATATCACTATTATGTCT
55529 T
131 T
* * * * * *
55530 AAAAATCAATATTGATTCGAGAGAAAATGATAATATCGAATTATTTCCAATCGAGAATAAATGAC
1 AAAAATCAATATTGATTCGAGAGAAAACGATAATAACGAATGATTTCCAATCAAGAATAAATAAA
** * * *
55595 CTCTCATGCCTTA-AAGCAGTCATTTATTACTCTAAACGAAATGAAAAGATATTACTATT
66 CTCTCATGAATTACAA-CAATCATTTATTACTCCAAACGAAATGAAAAGATATCACTATT
55654 CTTAATATTG
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
130 2 0.02
131 103 0.98
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (131 bp):
AAAAATCAATATTGATTCGAGAGAAAACGATAATAACGAATGATTTCCAATCAAGAATAAATAAA
CTCTCATGAATTACAACAATCATTTATTACTCCAAACGAAATGAAAAGATATCACTATTATGTCT
T
Found at i:56135 original size:5 final size:5
Alignment explanation
Indices: 56125--56152 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
56115 GTAAAAATTG
56125 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
56153 ATAGGACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:57660 original size:3 final size:3
Alignment explanation
Indices: 57646--57675 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
57636 AAAGGTATGC
57646 AAT AATT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AA
57676 AGTCGGGACG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:58281 original size:133 final size:133
Alignment explanation
Indices: 57872--58358 Score: 482
Period size: 133 Copynumber: 3.6 Consensus size: 133
57862 GAGATATGGG
* * *
57872 AATGTTGATTCATTCCACCGTTC--AGGAAAATAGAATCAGGGCAGACTTGTTCCACTGTTCCTC
1 AATGTTGATTCATTCCACTGTTCTTAGGAAAATTGAATCAAGGCAGACTTGTTCCACTGTTCCTC
* * * * * *
57935 AGGGAAGTTCAAATCTGGAAAAATAGAGGGATCTGTACTGGTGCTTCTTAAGGAAAAATCATATC
66 AGGGAAGATCAAATCTGGAAAAA-AGAGGGATATGTTCTGCTGCTTCTTGAGGGAAAATCATATC
58000 TGGA
130 TGGA
* * * * *
58004 AATGTTGATTTATTCCACTATTATTCAAGGAAAATTGAATCGAGACAGACTTGTTCCACTGTTCC
1 AATGTTGATTCATTCCACTGTTCTT--AGGAAAATTGAATCAAGGCAGACTTGTTCCACTGTTCC
* * *** * * *
58069 TCAAGGAAAAT-AAAAAAGGAAAAAATAGGGATATGTTCTGCTGCTTCTTGAAGGAAAATCAGAT
64 TCAGGGAAGATCAAATCTGGAAAAAAGAGGGATATGTTCTGCTGCTTCTTGAGGGAAAATCATAT
58133 CTGGA
129 CTGGA
* * * * *
58138 AATGCTGATTCATTCCACTGTTCTTTATGGAAGATTGAATCAAGGCAGACTTGATCCACTATTCT
1 AATGTTGATTCATTCCACTGTTC-TTA-GGAAAATTGAATCAAGGCAGACTTGTTCCACTGTTCC
* **
58203 TTAGGGAAGATCAAATCTGGAAAAAA-A-GGATATGTTCCT-CCACTTCTTGAGGGAAAATCATA
64 TCAGGGAAGATCAAATCTGGAAAAAAGAGGGATATGTT-CTGCTGCTTCTTGAGGGAAAATCATA
*
58265 TCTAGA
128 TCTGGA
* * * ** * ** *
58271 AATGTTGATTCATTCCACTCTTCTTCAGGTGATATTGAATTGAGGAAGACTTGTTCCACTACTAC
1 AATGTTGATTCATTCCACTGTTCTT-AGG-AAAATTGAATCAAGGCAGACTTGTTCCACTGTTCC
* *
58336 TCAAGGAAGATCAAATCTAGAAA
64 TCAGGGAAGATCAAATCTGGAAA
58359 GAGATTATAT
Statistics
Matches: 288, Mismatches: 57, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
132 23 0.08
133 102 0.35
134 98 0.34
135 23 0.08
136 42 0.15
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (133 bp):
AATGTTGATTCATTCCACTGTTCTTAGGAAAATTGAATCAAGGCAGACTTGTTCCACTGTTCCTC
AGGGAAGATCAAATCTGGAAAAAAGAGGGATATGTTCTGCTGCTTCTTGAGGGAAAATCATATCT
GGA
Found at i:59691 original size:12 final size:12
Alignment explanation
Indices: 59674--59709 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
59664 TAAACCCTCA
59674 TTTTATTTATTC
1 TTTTATTTATTC
59686 TTTTATTTATTC
1 TTTTATTTATTC
59698 TTTT-TTT-TTC
1 TTTTATTTATTC
59708 TT
1 TT
59710 CAGGTGAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.21
11 3 0.12
12 16 0.67
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTATTTATTC
Done.