genome.fa.s7251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007251.1 Hibiscus syriacus cultivar Beakdansim tig00019208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47234

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2472--2526	24	2.3	24	83	0	65	18	10	18	52	1.73
2483--2538	24	2.4	24	75	3	60	17	8	17	55	1.67
4778--4964	2	94.0	2	69	16	104	44	4	3	46	1.42
4931--5003	37	2.0	37	81	10	87	46	2	4	46	1.36
4998--5048	20	2.5	20	90	0	75	45	9	5	39	1.62
5110--5153	21	2.0	22	86	4	63	45	6	0	47	1.29
5188--5264	27	2.8	27	86	5	93	54	1	5	38	1.31
5224--5270	21	2.2	22	81	11	62	57	0	6	36	1.24
5232--5319	8	12.4	7	72	22	53	53	2	10	34	1.47
5277--5669	8	52.9	8	66	26	78	51	2	9	36	1.47
5207--5369	72	2.3	70	77	10	163	52	3	7	36	1.47
5339--5838	7	69.9	7	65	25	73	52	2	7	38	1.41
5426--5513	12	6.8	13	72	19	60	52	1	10	36	1.43
5442--5679	29	8.3	29	66	22	105	52	2	10	35	1.47
5562--5592	2	16.0	2	93	6	55	48	0	0	51	1.00
5661--5747	30	3.0	29	72	11	88	50	1	10	37	1.44
5425--5687	142	1.9	138	83	12	340	52	1	9	36	1.45
5729--5838	2	57.0	2	72	16	81	53	0	1	43	1.17
5735--5838	37	2.8	38	85	7	133	54	0	1	42	1.17
5750--5824	31	2.4	31	86	8	100	58	0	1	40	1.06
5812--5885	15	5.1	15	74	22	68	33	10	1	54	1.44
5779--5911	29	4.6	29	71	16	73	41	6	2	49	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12492--12522	4	7.8	4	100	0	62	25	0	0	74	0.82
13518--13587	12	5.8	12	73	6	61	17	14	18	50	1.79
13481--13589	48	2.3	48	85	6	141	20	15	16	47	1.82
13495--13589	24	4.0	24	83	2	111	21	13	16	48	1.81
14353--14433	2	40.0	2	69	16	51	40	4	3	50	1.42
14355--14484	25	5.2	25	73	18	78	40	6	3	50	1.43
14402--14475	17	4.5	17	75	16	75	39	6	1	52	1.36
14349--14628	59	4.6	59	70	17	189	37	7	3	51	1.47
14498--14602	7	14.9	7	72	18	67	32	8	3	55	1.48
14524--14606	13	6.2	13	76	13	62	33	8	2	55	1.43
14506--14610	15	7.3	15	71	21	50	33	8	2	55	1.45
14560--14628	26	2.6	26	82	11	70	37	7	2	52	1.44
14648--14675	14	2.0	14	100	0	56	57	0	7	35	1.26
14667--14819	23	6.5	23	73	19	75	41	5	4	49	1.46
14696--14775	2	39.0	2	70	22	51	41	5	2	51	1.37
14696--14827	25	5.1	27	68	23	88	40	6	3	50	1.42
14724--14805	34	2.4	35	78	17	100	39	8	2	50	1.46
14700--14782	44	1.9	44	90	7	134	39	6	2	51	1.39
14700--14878	27	6.6	27	75	17	133	36	7	2	53	1.43
14819--14878	25	2.3	27	80	5	70	31	8	1	58	1.38
15319--16011	6	115.3	6	96	1	339	34	0	16	49	1.47
15346--16016	18	37.8	18	95	3	1231	33	0	16	49	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16350--16402	24	2.2	25	83	10	65	33	15	1	49	1.55
16502--16556	2	28.0	2	76	10	51	50	0	5	43	1.25
16516--16674	30	5.1	30	69	20	87	52	1	9	37	1.42
16532--16680	8	20.4	7	70	23	78	52	1	10	35	1.45
16524--16590	22	3.0	22	89	4	100	56	0	7	35	1.27
16619--16752	22	5.8	22	72	21	80	55	1	6	35	1.35
16604--16751	36	4.1	36	78	11	167	55	2	6	35	1.38
16529--16733	22	9.0	22	72	18	84	54	1	8	35	1.41
16613--16751	73	1.9	73	84	10	187	56	1	6	35	1.34
16753--16850	39	2.5	39	100	0	196	41	5	4	48	1.44
16786--16858	18	3.8	18	70	20	58	42	4	2	50	1.35
16829--16867	20	2.0	20	84	0	51	46	5	0	48	1.24
19410--19682	36	7.6	36	90	0	420	17	26	22	34	1.96
20414--20462	19	2.4	21	90	6	75	14	22	26	36	1.92
20415--20462	10	4.8	10	85	10	71	12	22	27	37	1.90
20483--20517	18	1.9	18	100	0	70	17	48	22	11	1.79
20463--20506	13	3.4	13	96	0	79	15	47	20	15	1.82
20526--20591	29	2.3	29	86	0	87	25	7	25	40	1.82
20526--20600	29	2.6	28	81	8	78	25	6	25	42	1.79
21317--21385	24	2.9	24	73	0	66	24	11	18	44	1.83
27615--27658	9	4.6	10	83	11	65	13	22	29	34	1.93
27614--27658	19	2.4	19	96	0	81	15	22	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27624--27671	19	2.5	19	79	0	51	16	27	27	29	1.97
27671--27701	13	2.4	13	94	0	53	16	48	19	16	1.81
27714--27777	29	2.2	29	85	0	83	26	7	26	39	1.83
28512--28580	24	2.9	24	73	0	66	24	11	18	44	1.83
29110--29135	1	26.0	1	100	0	52	100	0	0	0	0.00
30863--30931	30	2.3	30	77	5	77	26	13	26	34	1.92
31765--31802	19	2.0	19	100	0	76	42	0	15	42	1.47
32029--32134	32	3.3	32	81	0	104	41	12	15	31	1.83
32375--32974	205	3.0	201	82	5	701	36	11	14	37	1.83
33910--33962	26	2.0	26	100	0	106	26	13	11	49	1.75
34065--34104	21	2.0	21	90	5	64	35	12	7	45	1.70
39920--40005	29	2.9	30	74	10	95	20	12	25	40	1.88
39913--40042	30	4.4	30	76	7	122	19	11	29	40	1.86
41592--41664	2	37.0	2	97	2	139	50	0	0	49	1.00
42929--43236	30	10.4	29	74	8	244	19	15	28	36	1.93
42973--43229	30	8.6	30	80	6	292	20	15	27	36	1.93
42944--43229	60	4.8	60	93	1	461	19	15	28	36	1.92
43810--43848	16	2.4	16	100	0	78	20	25	35	17	1.95
44683--44747	27	2.5	26	95	5	121	3	27	21	47	1.65
45976--46039	32	2.0	32	87	6	94	46	17	6	29	1.72
46125--46324	68	3.0	68	88	2	296	47	12	12	27	1.77

Tables:   1

The End!