Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007252.1 Hibiscus syriacus cultivar Beakdansim tig00019210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96306
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Found at i:2432 original size:18 final size:18
Alignment explanation
Indices: 2392--2426 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2382 ACCGGTCATA
2392 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
*
2410 ACCCGACCTGTTGACCC
1 ACCCGACCCGTTGACCC
2427 TTCCCGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.49, G:0.20, T:0.14
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:3863 original size:110 final size:110
Alignment explanation
Indices: 3719--3936 Score: 359
Period size: 110 Copynumber: 2.0 Consensus size: 110
3709 ACACTACTGT
*
3719 TGATGAAATTGTTTTATATTGCCAGAGGAAATCATGGATTTTGTTA-AAGACATTTAAGTTATTC
1 TGATGAAATTGTTTTATATTGCCAGAGGAAATCATGCATTTTGTTATAA-ACATTTAAGTTATTC
*
3783 CGGAAGCAAAGAGTAATGTAATAAAAGTAACAATCAAGTACATTCC
65 CAGAAGCAAAGAGTAATGTAATAAAAGTAACAATCAAGTACATTCC
*
3829 TGATGAAA-TGTTTTATATTGCTAGAGGAAAATCATGCATTTTGTTATAAACATTTAAGTTATTC
1 TGATGAAATTGTTTTATATTGCCAGAGG-AAATCATGCATTTTGTTATAAACATTTAAGTTATTC
* *
3893 CAGAAGCAAAGATTAATGTATTAAAAGTAACAATCAAGTACATT
65 CAGAAGCAAAGAGTAATGTAATAAAAGTAACAATCAAGTACATT
3937 ATGGCATGCA
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
109 18 0.18
110 81 0.80
111 2 0.02
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (110 bp):
TGATGAAATTGTTTTATATTGCCAGAGGAAATCATGCATTTTGTTATAAACATTTAAGTTATTCC
AGAAGCAAAGAGTAATGTAATAAAAGTAACAATCAAGTACATTCC
Found at i:10296 original size:3 final size:3
Alignment explanation
Indices: 10290--10355 Score: 64
Period size: 3 Copynumber: 21.7 Consensus size: 3
10280 AGGGTCTTTT
* * *
10290 TTA TTA TT- TAA TTA TTA ATA CTA TTA TTA GTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
10335 -TA GTTA TTA TTAA TTA TTA TT
1 TTA -TTA TTA TT-A TTA TTA TT
10356 TATCCATTAC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
2 3 0.06
3 42 0.79
4 8 0.15
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:10331 original size:25 final size:25
Alignment explanation
Indices: 10290--10355 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
10280 AGGGTCTTTT
*
10290 TTATTATTTAATTATTAATACTA-TTA
1 TTATTAATT-ATTATTAATA-TAGTTA
*
10316 TTAGTT-ATTATTATTATTATAGTTA
1 TTA-TTAATTATTATTAATATAGTTA
10341 TTATTAATTATTATT
1 TTATTAATTATTATT
10356 TATCCATTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
24 4 0.11
25 24 0.69
26 5 0.14
27 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (25 bp):
TTATTAATTATTATTAATATAGTTA
Found at i:12392 original size:15 final size:15
Alignment explanation
Indices: 12372--12400 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
12362 CGTTTTTCAT
12372 TTTTATTTTATTGTA
1 TTTTATTTTATTGTA
12387 TTTTATTTTATTGT
1 TTTTATTTTATTGT
12401 TCACACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (15 bp):
TTTTATTTTATTGTA
Found at i:15451 original size:27 final size:27
Alignment explanation
Indices: 15421--15473 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
15411 AACTAAAGAC
15421 TAAATTATAAATTTTAAAAGATTGGAT
1 TAAATTATAAATTTTAAAAGATTGGAT
*
15448 TAAATTATAGATTTTAAAAGATTGGA
1 TAAATTATAAATTTTAAAAGATTGGA
15474 GGGAGTGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (27 bp):
TAAATTATAAATTTTAAAAGATTGGAT
Found at i:17478 original size:46 final size:46
Alignment explanation
Indices: 17393--17511 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 46
17383 AAAAACCCTC
* * ** **
17393 TTTACCAGAGCTGGAGAATACTATTTACCAGACTTGGAAAAATTTG
1 TTTACCAGAGCTGGAAAATTCTATTTACCAGACGCGGAAAAATCCG
* * * *
17439 TTTACCAGAGCTGGAAAATTGTATTTACCTGTCGCGGAAAACTCCG
1 TTTACCAGAGCTGGAAAATTCTATTTACCAGACGCGGAAAAATCCG
* *
17485 TTTACCAGAGCCGGAAAACTCTATTTA
1 TTTACCAGAGCTGGAAAATTCTATTTA
17512 ATATATAAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (46 bp):
TTTACCAGAGCTGGAAAATTCTATTTACCAGACGCGGAAAAATCCG
Found at i:17511 original size:23 final size:23
Alignment explanation
Indices: 17384--17511 Score: 91
Period size: 23 Copynumber: 5.6 Consensus size: 23
17374 ATCAGAATCA
* *
17384 AAAACCCTCTTTACCAGAGCTGG
1 AAAACTCTATTTACCAGAGCTGG
*
17407 AGAA-TACTATTTACCAGA-CTTGG
1 AAAACT-CTATTTACCAGAGC-TGG
* * *
17430 AAAAATTTGTTTACCAGAGCTGG
1 AAAACTCTATTTACCAGAGCTGG
* * * *
17453 AAAATTGTATTTACCTGTCGC-GG
1 AAAACTCTATTTACCAG-AGCTGG
** *
17476 AAAACTCCGTTTACCAGAGCCGG
1 AAAACTCTATTTACCAGAGCTGG
17499 AAAACTCTATTTA
1 AAAACTCTATTTA
17512 ATATATAAAT
Statistics
Matches: 80, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
22 3 0.04
23 73 0.91
24 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (23 bp):
AAAACTCTATTTACCAGAGCTGG
Found at i:22172 original size:26 final size:28
Alignment explanation
Indices: 22143--22213 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 28
22133 AAGAGACTAG
22143 TATATTATATATACTACATACAT-AT-A
1 TATATTATATATACTACATACATCATAA
* *
22169 TATAATATACATACTACATACATCCATCAA
1 TATATTATATATACTACATACAT-CAT-AA
22199 TATATTATATATACT
1 TATATTATATATACT
22214 TAAATTGTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 21 0.57
28 2 0.05
30 14 0.38
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (28 bp):
TATATTATATATACTACATACATCATAA
Found at i:22176 original size:22 final size:22
Alignment explanation
Indices: 22143--22188 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
22133 AAGAGACTAG
22143 TATATTATATATAC-TACATACA
1 TATATTATATATACATAC-TACA
22165 TATA-TATAATATACATACTACA
1 TATATTAT-ATATACATACTACA
22187 TA
1 TA
22189 CATCCATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 3 0.14
22 16 0.73
23 3 0.14
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (22 bp):
TATATTATATATACATACTACA
Found at i:22191 original size:30 final size:31
Alignment explanation
Indices: 22157--22240 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 31
22147 TTATATATAC
*
22157 TACATACATATATATAATATACATAC-TACA
1 TACATACATATATATAATATACATACTTAAA
* * *
22187 TACATCCATCA-ATATATTATATATACTTAAA
1 TACATACAT-ATATATAATATACATACTTAAA
**
22218 T-TGTACATATATATAATATACAT
1 TACATACATATATATAATATACAT
22241 TATTACATTC
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
29 1 0.02
30 36 0.86
31 5 0.12
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.38
Consensus pattern (31 bp):
TACATACATATATATAATATACATACTTAAA
Found at i:22381 original size:33 final size:33
Alignment explanation
Indices: 22339--22436 Score: 151
Period size: 33 Copynumber: 3.0 Consensus size: 33
22329 CCCGAAACCA
*
22339 TATCATCGATATATGTATGAAGAGAGGAAGCTC
1 TATCATCGATATATGTACGAAGAGAGGAAGCTC
* *
22372 TATCATCGATATATGTACAAAGAGAGAAAGCTC
1 TATCATCGATATATGTACGAAGAGAGGAAGCTC
* *
22405 TATCATCGATATATATACGAACAGAGGAAGCT
1 TATCATCGATATATGTACGAAGAGAGGAAGCT
22437 TGAGGGCCTA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (33 bp):
TATCATCGATATATGTACGAAGAGAGGAAGCTC
Found at i:23069 original size:26 final size:25
Alignment explanation
Indices: 23036--23095 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
23026 AAACTTAATT
23036 AAAA-AAAATA-AAAAAA-AGTACAA
1 AAAACAAAATAGAAAAAACAGTA-AA
23059 TAATAACAAAATAGTAAAAAACAGTAAA
1 -AA-AACAAAATAG-AAAAAACAGTAAA
23087 AAAACAAAA
1 AAAACAAAA
23096 ACTTAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
24 2 0.06
25 2 0.06
26 13 0.42
27 2 0.06
28 8 0.26
29 4 0.13
ACGTcount: A:0.77, C:0.07, G:0.05, T:0.12
Consensus pattern (25 bp):
AAAACAAAATAGAAAAAACAGTAAA
Found at i:24124 original size:23 final size:23
Alignment explanation
Indices: 24092--24219 Score: 107
Period size: 23 Copynumber: 5.6 Consensus size: 23
24082 ATGTATATCT
*
24092 TAAATAGAGTTTTCCGGCTTTGG
1 TAAACAGAGTTTTCCGGCTTTGG
*
24115 TAAACGGAGTTTTCC-GCGTTTGG
1 TAAACAGAGTTTTCCGGC-TTTGG
* * * *
24138 TAAATACAGTTTTCCGACTCTGG
1 TAAACAGAGTTTTCCGGCTTTGG
* * *
24161 TAAACAGATTTTTTCGTG-TATGG
1 TAAACAGAGTTTTCCG-GCTTTGG
* *
24184 TAAATAGAGTTCTCCGGCTTTGG
1 TAAACAGAGTTTTCCGGCTTTGG
* *
24207 TAAAAAGGGTTTT
1 TAAACAGAGTTTT
24220 TGATTCTGAA
Statistics
Matches: 80, Mismatches: 21, Indels: 8
0.73 0.19 0.07
Matches are distributed among these distances:
22 3 0.04
23 76 0.95
24 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (23 bp):
TAAACAGAGTTTTCCGGCTTTGG
Found at i:24162 original size:46 final size:46
Alignment explanation
Indices: 24092--24219 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 46
24082 ATGTATATCT
* *
24092 TAAATAGAGTTTTCCGGCTTTGGTAAACGGAGTTTTCCGCGTTTGG
1 TAAATAGAGTTTTCCGGCTTTGGTAAACAGAGTTTTCCGCGTATGG
* * * * * *
24138 TAAATACAGTTTTCCGACTCTGGTAAACAGATTTTTTCGTGTATGG
1 TAAATAGAGTTTTCCGGCTTTGGTAAACAGAGTTTTCCGCGTATGG
* * *
24184 TAAATAGAGTTCTCCGGCTTTGGTAAAAAGGGTTTT
1 TAAATAGAGTTTTCCGGCTTTGGTAAACAGAGTTTT
24220 TGATTCTGAA
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (46 bp):
TAAATAGAGTTTTCCGGCTTTGGTAAACAGAGTTTTCCGCGTATGG
Found at i:25405 original size:23 final size:23
Alignment explanation
Indices: 25373--25493 Score: 120
Period size: 23 Copynumber: 5.3 Consensus size: 23
25363 ATTTATATCT
* *
25373 TAAATAGAGTTTTCTGGCTCTGG
1 TAAACAGAGTTTTCCGGCTCTGG
*
25396 TAAACGGAGTTTTCC-GCGTCTGG
1 TAAACAGAGTTTTCCGGC-TCTGG
* * *
25419 TAAATATAGTTTTTCGGCTCTGG
1 TAAACAGAGTTTTCCGGCTCTGG
*
25442 TAAACAGATTTTTCCGAG-TCTGG
1 TAAACAGAGTTTTCCG-GCTCTGG
* * *
25465 TAAATAGAGTTCTCCGACTCTGG
1 TAAACAGAGTTTTCCGGCTCTGG
25488 TAAACA
1 TAAACA
25494 AGATTTTTGA
Statistics
Matches: 78, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
22 2 0.03
23 73 0.94
24 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (23 bp):
TAAACAGAGTTTTCCGGCTCTGG
Found at i:25440 original size:46 final size:46
Alignment explanation
Indices: 25373--25493 Score: 163
Period size: 46 Copynumber: 2.6 Consensus size: 46
25363 ATTTATATCT
* *
25373 TAAATAGAG-TTTTCTGGCTCTGGTAAACGGAGTTTTCCGCGTCTGG
1 TAAATAGAGTTTTTC-GGCTCTGGTAAACAGAGTTTTCCGAGTCTGG
* *
25419 TAAATATAGTTTTTCGGCTCTGGTAAACAGATTTTTCCGAGTCTGG
1 TAAATAGAGTTTTTCGGCTCTGGTAAACAGAGTTTTCCGAGTCTGG
* * *
25465 TAAATAGAGTTCTCCGACTCTGGTAAACA
1 TAAATAGAGTTTTTCGGCTCTGGTAAACA
25494 AGATTTTTGA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 61 0.92
47 5 0.08
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (46 bp):
TAAATAGAGTTTTTCGGCTCTGGTAAACAGAGTTTTCCGAGTCTGG
Found at i:33668 original size:2 final size:2
Alignment explanation
Indices: 33663--33702 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
33653 AGGTTTATTA
33663 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33703 TTGGGTAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:34151 original size:105 final size:105
Alignment explanation
Indices: 33969--34176 Score: 371
Period size: 105 Copynumber: 2.0 Consensus size: 105
33959 AAAAATTACA
* *
33969 TCAAAACCAATAAACCCCTAAACCAAACCCAAAAAGAAATCCTAAGTTTACATAACAGTACCAAT
1 TCAAAACCAATAAACCCCTAAACCAAACCCAAAAAAAAATCCTAAGTTTACATAACAGCACCAAT
34034 GAGTTTTCAAAAAGTTTATTGATGGATTCAGCGAAGATAT
66 GAGTTTTCAAAAAGTTTATTGATGGATTCAGCGAAGATAT
* * *
34074 TCAAAACCAATAAGCCCCTAAACCAAACCCAAAAAAAAATCCTAAGTTTACATATCAGCACTAAT
1 TCAAAACCAATAAACCCCTAAACCAAACCCAAAAAAAAATCCTAAGTTTACATAACAGCACCAAT
34139 GAGTTTTCAAAAAGTTTATTGATGGATTCAGCGAAGAT
66 GAGTTTTCAAAAAGTTTATTGATGGATTCAGCGAAGAT
34177 GGGTTAAAGA
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 98 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (105 bp):
TCAAAACCAATAAACCCCTAAACCAAACCCAAAAAAAAATCCTAAGTTTACATAACAGCACCAAT
GAGTTTTCAAAAAGTTTATTGATGGATTCAGCGAAGATAT
Found at i:43819 original size:28 final size:28
Alignment explanation
Indices: 43787--43844 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
43777 ATATGGTATC
43787 TCACAGTCATAACTTCAATTCACCTATT
1 TCACAGTCATAACTTCAATTCACCTATT
43815 TCACAGTCATAACTTCAATTCACCTATT
1 TCACAGTCATAACTTCAATTCACCTATT
43843 TC
1 TC
43845 TTTACAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.03, T:0.36
Consensus pattern (28 bp):
TCACAGTCATAACTTCAATTCACCTATT
Found at i:50702 original size:38 final size:38
Alignment explanation
Indices: 50646--50845 Score: 147
Period size: 37 Copynumber: 5.3 Consensus size: 38
50636 TTGCAAATTG
*
50646 TTTTTGAAAATACATATATAATATATAG-TTTAAAACAT
1 TTTTTGAAAATA-TTATATAATATATAGTTTTAAAACAT
*
50684 TTTTTGAAAATATGTATAT--TATATAGTTTTTAAA-AT
1 TTTTTGAAAATAT-TATATAATATATAGTTTTAAAACAT
*
50720 ATTTTTG-AAA-ATTATATAATATATAGTTTTTGAAAAC-G
1 -TTTTTGAAAATATTATATAATATATAG-TTTT-AAAACAT
*
50758 TTTTT-AAAATA-TATATAATATATACTTTTGAAAAC--
1 TTTTTGAAAATATTATATAATATATAGTTTT-AAAACAT
* * * *
50793 GTTATGAAAACATTTATATAATATATAATTTTTAAAAACCA-
1 TTTTTGAAAATA-TTATATAATATAT-AGTTTT-AAAA-CAT
50834 -TTTTGAAAATAT
1 TTTTTGAAAATAT
50846 ATTTTTTGAA
Statistics
Matches: 134, Mismatches: 12, Indels: 31
0.76 0.07 0.18
Matches are distributed among these distances:
34 5 0.04
35 5 0.04
36 34 0.25
37 37 0.28
38 33 0.25
39 10 0.07
40 10 0.07
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.45
Consensus pattern (38 bp):
TTTTTGAAAATATTATATAATATATAGTTTTAAAACAT
Found at i:50743 original size:36 final size:37
Alignment explanation
Indices: 50646--51034 Score: 213
Period size: 38 Copynumber: 10.0 Consensus size: 37
50636 TTGCAAATTG
50646 TTTTTGAAAATACATATATAATATATAG--TTTAAAACA
1 TTTTTGAAAAT--ATATATAATATATAGTTTTTAAAACA
* * *
50683 TTTTTTGAAAATATGTATATTATATAGTTTTTAAAATA
1 -TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
*
50721 TTTTTGAAAAT-TATATAATATATAGTTTTTGAAAACG
1 TTTTTGAAAATATATATAATATATAGTTTTT-AAAACA
* *
50758 TTTTT-AAAATATATATAATATATACTTTTGAAAAC-
1 TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
* * * *
50793 GTTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTTG-AAA-ATATATATAATATATAGTTTTT-AAAA-CA
* * *
50834 -TTTTGAAAATATATTTTTTGAAAATTATATAATATATAGTTTTTGAAA-A
1 TTTTTGAAAATATA-----T-ATAA-TATAT-A-GT-T--TTTA--AAACA
* ** *
50883 CTTTTTTAAAATATATATAATATATACCTTTGAAAAC-
1 -TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
* * * *
50920 GTTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTTG-AAA-ATATATATAATATATAGTTTTT-AAAA-CA
50961 -TTTTGAAAATATATATAATATATAGTTTTTTTAAAACA
1 TTTTTGAAAATATATATAATATATAG--TTTTTAAAACA
** * *
50999 TTTTAAAAAATTTATATATTATAT-GTTTTTGAAAAC
1 TTTTTGAAAATATATATAATATATAGTTTTT-AAAAC
51035 GTTTATATAT
Statistics
Matches: 277, Mismatches: 38, Indels: 73
0.71 0.10 0.19
Matches are distributed among these distances:
35 3 0.01
36 48 0.17
37 51 0.18
38 78 0.28
39 39 0.14
40 15 0.05
41 1 0.00
43 2 0.01
44 8 0.03
45 8 0.03
46 2 0.01
47 2 0.01
48 1 0.00
49 1 0.00
50 3 0.01
51 15 0.05
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.45
Consensus pattern (37 bp):
TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
Found at i:50756 original size:75 final size:73
Alignment explanation
Indices: 50620--50847 Score: 214
Period size: 75 Copynumber: 3.1 Consensus size: 73
50610 ATATATACAC
* * *
50620 ATATATATTATATAGTTTGCAAATTGTTTTTGAAAATACATATATAATATATAG--TTTAAAACA
1 ATATATATTATATAGTTTTCAAAATATTTTTGAAAAT---TATATAATATATAGTTTTTAAAACA
50683 TTTTTTGAAAAT
63 -TTTTTGAAAAT
* * *
50695 ATGTATATTATATAGTTTTTAAAATATTTTTGAAAATTATATAATATATAGTTTTTGAAAACGTT
1 ATATATATTATATAGTTTTCAAAATATTTTTGAAAATTATATAATATATAGTTTTT-AAAACATT
50760 TTT-AAAAT
65 TTTGAAAAT
* * * ** * *
50768 ATATATAATATATACTTTTGAAAA-CGTTATGAAAACATTTATATAATATATAATTTTTAAAAAC
1 ATATATATTATATAGTTTTCAAAATATTTTTG-AAA-A-TTATATAATATATAGTTTTT-AAAA-
50832 CA-TTTTGAAAAT
61 CATTTTTGAAAAT
50844 ATAT
1 ATAT
50848 TTTTTGAAAA
Statistics
Matches: 129, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
72 18 0.14
73 28 0.22
74 9 0.07
75 64 0.50
76 10 0.08
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (73 bp):
ATATATATTATATAGTTTTCAAAATATTTTTGAAAATTATATAATATATAGTTTTTAAAACATTT
TTGAAAAT
Found at i:50854 original size:15 final size:16
Alignment explanation
Indices: 50834--50863 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50824 TTAAAAACCA
50834 TTTTGAAAA-TATATT
1 TTTTGAAAATTATATT
50849 TTTTGAAAATTATAT
1 TTTTGAAAATTATAT
50864 AATATATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTTTGAAAATTATATT
Found at i:50855 original size:127 final size:127
Alignment explanation
Indices: 50721--50974 Score: 490
Period size: 127 Copynumber: 2.0 Consensus size: 127
50711 TTTTAAAATA
*
50721 TTTTTGAAAATTATATAATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATATACTTT
1 TTTTTGAAAATTATATAATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATATACCTT
50786 TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATTTTGAAAATATAT
66 TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATTTTGAAAATATAT
*
50848 TTTTTGAAAATTATATAATATATAGTTTTTGAAAACTTTTTTAAAATATATATAATATATACCTT
1 TTTTTGAAAATTATATAATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATATACCTT
50913 TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATTTTGAAAATATAT
66 TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATTTTGAAAATATAT
50975 ATAATATATA
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 125 1.00
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.44
Consensus pattern (127 bp):
TTTTTGAAAATTATATAATATATAGTTTTTGAAAACGTTTTTAAAATATATATAATATATACCTT
TGAAAACGTTATGAAAACATTTATATAATATATAATTTTTAAAAACCATTTTGAAAATATAT
Found at i:50870 original size:25 final size:25
Alignment explanation
Indices: 50806--50882 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
50796 ATGAAAACAT
*
50806 TTATATAATATATAATTTTTAAAAA
1 TTATATAATATATAATTTTTGAAAA
** * * *
50831 CCATTTTGAAAATATATTTTTTGAAAA
1 TTA-TAT-AATATATAATTTTTGAAAA
*
50858 TTATATAATATATAGTTTTTGAAAA
1 TTATATAATATATAATTTTTGAAAA
50883 CTTTTTTAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
25 18 0.46
26 4 0.10
27 17 0.44
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (25 bp):
TTATATAATATATAATTTTTGAAAA
Found at i:50976 original size:38 final size:37
Alignment explanation
Indices: 50849--51034 Score: 171
Period size: 39 Copynumber: 5.0 Consensus size: 37
50839 AAAATATATT
* *
50849 TTTTGAAAAT-TATATAATATATAGTTTTTGAAAACT
1 TTTTGAAAATATATATAATATATAATTTTTGAAAACA
* ** *
50885 TTTTTAAAATATATATAATATAT-ACCTTTGAAAACG
1 TTTTGAAAATATATATAATATATAATTTTTGAAAACA
* * *
50921 TTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTG-AAA-ATATATATAATATATAATTTTTGAAAA-CA
* *
50961 TTTTGAAAATATATATAATATATAGTTTTTTTAAAACA
1 TTTTGAAAATATATATAATATATA-ATTTTTGAAAACA
* * * *
50999 TTTTAAAAAATTTATATATTATAT-GTTTTTGAAAAC
1 TTTT-GAAAATATATATAATATATAATTTTTGAAAAC
51035 GTTTATATAT
Statistics
Matches: 122, Mismatches: 21, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
36 21 0.17
37 25 0.20
38 35 0.29
39 36 0.30
40 5 0.04
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (37 bp):
TTTTGAAAATATATATAATATATAATTTTTGAAAACA
Found at i:72932 original size:24 final size:24
Alignment explanation
Indices: 72901--72966 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
72891 AAAGGTAACA
72901 ATCT-ATCGCCAGTGAGAAGACTG
1 ATCTGATCGCCAGTGAGAAGACTG
72924 ATCTGATCGCCAGTGAGAAGACTG
1 ATCTGATCGCCAGTGAGAAGACTG
*
72948 ATCTGATCGCC-GTGTGAAG
1 ATCTGATCGCCAGTGAGAAG
72967 TGAAACACGA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
23 11 0.27
24 30 0.73
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (24 bp):
ATCTGATCGCCAGTGAGAAGACTG
Found at i:76670 original size:8 final size:8
Alignment explanation
Indices: 76657--76697 Score: 66
Period size: 8 Copynumber: 5.1 Consensus size: 8
76647 GCCGATCAAC
76657 AAAGATGA
1 AAAGATGA
76665 AAAGATGA
1 AAAGATGA
76673 AAAGATGA
1 AAAGATGA
76681 AAAGA-GA
1 AAAGATGA
76688 AAGAGATGA
1 AA-AGATGA
76697 A
1 A
76698 TGGCTTACTG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 4 0.13
8 24 0.77
9 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.27, T:0.10
Consensus pattern (8 bp):
AAAGATGA
Found at i:78511 original size:3 final size:3
Alignment explanation
Indices: 78500--78548 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
78490 TTTTTTATCG
78500 TTA TT- TTA TTA TTA TTA TTA TTA TTA TT- TT- TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
78543 TTA TTA
1 TTA TTA
78549 CATTTTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.14
3 34 0.79
4 3 0.07
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:78535 original size:13 final size:13
Alignment explanation
Indices: 78505--78548 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
78495 TATCGTTATT
78505 TTATTATTA-TTA
1 TTATTATTATTTA
*
78517 TTATTATTATTTT
1 TTATTATTATTTA
78530 TTATTATTATTTA
1 TTATTATTATTTA
78543 TTATTA
1 TTATTA
78549 CATTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 9 0.31
13 20 0.69
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTATTATTTA
Found at i:78537 original size:25 final size:25
Alignment explanation
Indices: 78503--78556 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
78493 TTTATCGTTA
*
78503 TTTTATTATTA-TTATTATTATTATT
1 TTTTATTATTATTTATTATTA-CATT
78528 TTTTATTATTATTTATTATTACATT
1 TTTTATTATTATTTATTATTACATT
78553 TTTT
1 TTTT
78557 TTTTGCAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 18 0.67
26 9 0.33
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTTATTATTATTTATTATTACATT
Found at i:80607 original size:17 final size:18
Alignment explanation
Indices: 80585--80618 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80575 AAGTCGATTA
*
80585 TATTTTACTAAT-TAATT
1 TATTTTAATAATGTAATT
80602 TATTTTAATAATGTAAT
1 TATTTTAATAATGTAAT
80619 GTGTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TATTTTAATAATGTAATT
Found at i:84234 original size:11 final size:11
Alignment explanation
Indices: 84206--84243 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
84196 AAGAGCAAAG
84206 AGAAAAATCAA
1 AGAAAAATCAA
84217 AGCAAAAATCAA
1 AG-AAAAATCAA
*
84229 AGAAAAAGCAA
1 AGAAAAATCAA
84240 AGAA
1 AGAA
84244 CAAAAAGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.71, C:0.11, G:0.13, T:0.05
Consensus pattern (11 bp):
AGAAAAATCAA
Found at i:85850 original size:36 final size:36
Alignment explanation
Indices: 85798--85939 Score: 159
Period size: 36 Copynumber: 4.0 Consensus size: 36
85788 TGAGAATTTT
85798 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCTTTC
1 AAAACAAA-TTTTGTCTCGCTTGAGACAATTTCTTTC
* * *
85835 GAAGCAAATTTTGTCTCGCTTGAGACAGCTTTC--TC
1 AAAACAAATTTTGTCTCGCTTGAGACA-ATTTCTTTC
* *
85870 AAAACAAATTTTGTCTCGTTTGAGACAAATTCTCTT-
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCT-TTC
* *
85906 AAAACAAACTTCGTCTCGCTTGAGAC-ATTT-TTTC
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCTTTC
85940 CTTTGAGATA
Statistics
Matches: 88, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
33 2 0.02
34 4 0.05
35 29 0.33
36 42 0.48
37 11 0.12
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCGCTTGAGACAATTTCTTTC
Found at i:85893 original size:71 final size:72
Alignment explanation
Indices: 85798--85932 Score: 193
Period size: 71 Copynumber: 1.9 Consensus size: 72
85788 TGAGAATTTT
* * * * *
85798 AAAACAAATTTTTGTCTCGCTTGAGACAATTTCT-TTCGAAGCAAATTTTGTCTCGCTTGAGACA
1 AAAACAAATTTTTGTCTCGCTTGAGACAAATTCTCTT-AAAACAAACTTCGTCTCGCTTGAGACA
85862 GCTTTCTC
65 GCTTTCTC
*
85870 AAAACAAA-TTTTGTCTCGTTTGAGACAAATTCTCTTAAAACAAACTTCGTCTCGCTTGAGACA
1 AAAACAAATTTTTGTCTCGCTTGAGACAAATTCTCTTAAAACAAACTTCGTCTCGCTTGAGACA
85933 TTTTTTCCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
71 46 0.82
72 10 0.18
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (72 bp):
AAAACAAATTTTTGTCTCGCTTGAGACAAATTCTCTTAAAACAAACTTCGTCTCGCTTGAGACAG
CTTTCTC
Found at i:86072 original size:105 final size:105
Alignment explanation
Indices: 85899--86201 Score: 500
Period size: 105 Copynumber: 2.9 Consensus size: 105
85889 TTGAGACAAA
* * * * * *
85899 TTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTTTCCTTTGAGATACAAATTTTGAATTT
1 TTCTTTTAAAACAAATTTCGTCTCGCTTGAGAC-CTTTTCCCTTTGAGATCCAAATTTCGAATTT
85964 GATTCACTTAAAACAAAATTAATCTCACCTTAGATTGTTGT
65 GATTCACTTAAAACAAAATTAATCTCACCTTAGATTGTTGT
86005 TTCTTTTAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTG
1 TTCTTTTAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTG
86070 ATTCACTTAAAACAAAATTAATCTCACCTTAGATTGTTGT
66 ATTCACTTAAAACAAAATTAATCTCACCTTAGATTGTTGT
86110 TTCTTTTAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTG
1 TTCTTTTAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTG
* * *
86175 TTTCACATT-AAACAAAGTTGATCTCAC
66 ATTCAC-TTAAAACAAAATTAATCTCAC
86202 TTGAGATCGT
Statistics
Matches: 187, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
105 154 0.82
106 33 0.18
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (105 bp):
TTCTTTTAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTG
ATTCACTTAAAACAAAATTAATCTCACCTTAGATTGTTGT
Found at i:86533 original size:28 final size:27
Alignment explanation
Indices: 86470--86523 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
86460 CTCTTGAGAT
86470 AAATCTTTGAGTCTGTTCCTTTTGAAA
1 AAATCTTTGAGTCTGTTCCTTTTGAAA
*
86497 AAATCTTTGAGTTTGTTTCC-TTTGAAA
1 AAATCTTTGAGTCTG-TTCCTTTTGAAA
86524 CAAAATTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (27 bp):
AAATCTTTGAGTCTGTTCCTTTTGAAA
Found at i:86698 original size:15 final size:15
Alignment explanation
Indices: 86675--86718 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
86665 TTTTGAGTCG
*
86675 TTTCCCTTGAAACAT
1 TTTCTCTTGAAACAT
86690 TTTCTCTTGAAACAT
1 TTTCTCTTGAAACAT
*
86705 TTTCTCTTAAAACA
1 TTTCTCTTGAAACA
86719 AGATCATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (15 bp):
TTTCTCTTGAAACAT
Found at i:87333 original size:130 final size:129
Alignment explanation
Indices: 87064--87315 Score: 380
Period size: 130 Copynumber: 1.9 Consensus size: 129
87054 GATAACCAGC
*
87064 CGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCATCACGTATGAG
1 CGTCCTCATCACGTAGGAACCGTGTTATCACCTTAAGATGGCCAGAACTCTTCATCACGTATGAG
* * * * * *
87129 CCGTGTCATCCCCAGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACAAGC
66 CAGTGTCAACCCCAGACCAGATCTCCTCATCACGTAGGAACCATGTCAACCATAGACAACAAGA
87193 CGTCCTCATCACGTAGGAACCGTGTTATCACCTTAAGATGGCCAAGAACTCTTCATCACGTATGA
1 CGTCCTCATCACGTAGGAACCGTGTTATCACCTTAAGATGGCC-AGAACTCTTCATCACGTATGA
* * * *
87258 GCAGTGTCAACCCTC-GACTAGATTTCCTCATCACGTAGGAACCATGTCACCCTTAGAC
65 GCAGTGTCAACCC-CAGACCAGATCTCCTCATCACGTAGGAACCATGTCAACCATAGAC
87316 GACCAGAACT
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 42 0.38
130 68 0.61
131 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.24
Consensus pattern (129 bp):
CGTCCTCATCACGTAGGAACCGTGTTATCACCTTAAGATGGCCAGAACTCTTCATCACGTATGAG
CAGTGTCAACCCCAGACCAGATCTCCTCATCACGTAGGAACCATGTCAACCATAGACAACAAGA
Found at i:87517 original size:3 final size:3
Alignment explanation
Indices: 87506--87554 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
87496 TTTTTTATCG
87506 TTA TT- TTA TTA TTA TTA TTA TTA TTA TT- TT- TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
87549 TTA TTA
1 TTA TTA
87555 CATTTTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.14
3 34 0.79
4 3 0.07
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:87541 original size:13 final size:13
Alignment explanation
Indices: 87511--87554 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
87501 TATCGTTATT
87511 TTATTATTA-TTA
1 TTATTATTATTTA
*
87523 TTATTATTATTTT
1 TTATTATTATTTA
87536 TTATTATTATTTA
1 TTATTATTATTTA
87549 TTATTA
1 TTATTA
87555 CATTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 9 0.31
13 20 0.69
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTATTATTTA
Found at i:87543 original size:25 final size:25
Alignment explanation
Indices: 87509--87562 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
87499 TTTATCGTTA
*
87509 TTTTATTATTA-TTATTATTATTATT
1 TTTTATTATTATTTATTATTA-CATT
87534 TTTTATTATTATTTATTATTACATT
1 TTTTATTATTATTTATTATTACATT
87559 TTTT
1 TTTT
87563 TTTGCAGGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 18 0.67
26 9 0.33
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTTATTATTATTTATTATTACATT
Found at i:89590 original size:17 final size:18
Alignment explanation
Indices: 89568--89601 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
89558 AAGTCGATTA
*
89568 TATTTTACTAAT-TAATT
1 TATTTTAATAATGTAATT
89585 TATTTTAATAATGTAAT
1 TATTTTAATAATGTAAT
89602 GTGTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TATTTTAATAATGTAATT
Found at i:90529 original size:24 final size:24
Alignment explanation
Indices: 90502--90548 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
90492 TAAATGAATG
90502 AACATAAACGAACATAACCGAACA
1 AACATAAACGAACATAACCGAACA
90526 AACATAAACGAACATAACCGAAC
1 AACATAAACGAACATAACCGAAC
90549 GTTCACGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.26, G:0.09, T:0.09
Consensus pattern (24 bp):
AACATAAACGAACATAACCGAACA
Done.