genome.fa.s7254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007254.1 Hibiscus syriacus cultivar Beakdansim tig00019221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74705

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761--821	31	2.0	31	87	6	88	54	1	1	42	1.20
1933--1963	15	2.1	15	93	0	53	38	16	12	32	1.86
2306--2340	17	2.1	17	88	0	52	34	11	20	34	1.88
2726--2809	43	2.0	43	100	0	168	34	33	0	32	1.58
8390--8425	18	2.0	18	94	0	63	22	19	22	36	1.95
10913--11276	33	11.1	33	84	3	416	13	24	15	46	1.81
15650--15891	121	2.0	121	99	0	475	28	28	7	35	1.84
18681--18735	3	18.3	3	96	0	101	63	0	1	34	1.05
19060--19475	112	3.7	112	88	4	640	26	19	14	39	1.90
19415--19480	20	3.3	20	67	23	57	15	24	7	53	1.68
19415--19515	40	2.5	39	90	3	157	17	23	7	50	1.72
19300--19623	152	2.1	152	89	3	501	26	19	12	41	1.87
19415--19512	39	2.5	40	93	1	162	18	23	8	50	1.73
19062--19967	489	1.9	490	90	2	1471	27	19	14	39	1.90
19077--19849	376	2.1	377	89	2	1167	27	19	13	39	1.90
19455--20225	113	6.8	112	90	1	1073	27	18	14	38	1.90
20625--20679	22	2.5	22	87	0	83	38	16	12	32	1.86
23142--23365	114	2.0	113	90	0	358	31	19	14	34	1.92
28899--28952	14	3.8	14	80	2	54	53	9	12	24	1.68
30533--30576	18	2.5	18	82	10	56	75	0	2	22	0.92
30516--30565	15	3.3	15	78	13	57	74	0	0	26	0.83
32697--32760	3	21.3	3	93	0	83	57	0	1	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35372--35440	12	5.7	12	73	24	56	69	2	0	27	1.02
35401--35434	13	2.5	14	90	4	52	73	2	0	23	0.97
35424--35546	43	2.8	43	90	3	185	67	5	4	22	1.29
36894--37018	64	1.9	66	85	9	177	29	22	20	28	1.98
37222--37259	17	2.2	18	85	4	51	60	10	15	13	1.59
39029--39066	15	2.5	15	100	0	76	57	13	5	23	1.56
42990--43061	21	3.4	21	92	0	117	36	34	12	16	1.87
44340--44550	90	2.3	90	88	1	307	31	22	13	32	1.92
45773--45858	17	4.9	17	87	5	111	27	18	11	41	1.85
45785--45855	34	2.1	35	94	2	126	28	16	12	42	1.85
50467--50518	24	2.2	24	82	0	59	50	17	11	21	1.77
50487--50604	24	4.9	24	88	6	150	40	19	16	22	1.91
50490--50621	48	2.7	47	79	11	142	42	18	15	22	1.89
53064--53126	13	4.5	13	76	18	63	14	19	49	17	1.80
53058--53112	18	2.9	18	89	8	74	14	20	49	16	1.80
53064--53130	31	2.2	31	88	0	107	13	17	50	17	1.77
53051--53090	8	5.5	8	80	19	52	20	25	40	15	1.90
55942--56201	43	6.0	42	85	4	324	32	19	23	25	1.97
60755--60787	15	2.2	15	94	0	57	30	33	21	15	1.94
60872--60945	29	2.6	29	97	2	141	18	21	16	43	1.88
60974--61009	7	5.4	7	87	12	58	41	27	0	30	1.56
60961--61009	12	3.9	12	84	10	62	38	26	4	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60981--61024	19	2.3	19	84	7	54	43	22	2	31	1.66
61318--61542	64	3.5	64	84	2	220	27	19	20	32	1.97
67803--67876	29	2.6	29	97	2	141	18	21	16	43	1.88
67892--67926	12	2.9	12	91	0	52	37	25	5	31	1.80
68296--68461	64	2.6	65	86	4	221	27	21	19	31	1.97
72583--72616	7	4.9	7	92	0	50	35	29	20	14	1.93
72580--72616	14	2.6	14	91	0	56	35	29	21	13	1.92

Tables:   1

The End!