Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007255.1 Hibiscus syriacus cultivar Beakdansim tig00019223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52689

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2292--2346
12
4.6
12
76
14
51
81
3
12
1
0.89
2304--2348
17
2.6
18
83
16
60
82
2
15
0
0.77
2307--2348
21
2.0
21
85
0
57
80
2
16
0
0.81
4252--4365
30
3.8
29
73
9
86
58
12
9
19
1.61
4230--4352
59
2.1
60
81
4
142
60
9
10
18
1.56
6174--6213
12
3.2
13
86
6
57
62
2
0
35
1.09
6172--6209
18
2.1
18
90
9
60
63
2
0
34
1.09
6452--6677
90
2.5
90
92
0
380
34
22
17
25
1.96
6696--6914
43
5.1
43
87
5
309
30
29
13
26
1.94
6970--7509
40
13.6
40
91
2
854
41
11
15
30
1.83
7298--7366
23
3.3
23
61
23
60
39
14
14
31
1.86
6970--7509
241
2.3
239
93
1
913
41
11
15
30
1.83
7783--7903
34
3.6
34
91
0
179
35
11
20
32
1.89
8011--8128
32
3.7
32
88
1
164
32
24
13
29
1.93
8472--8551
32
2.5
32
97
0
151
16
8
27
47
1.76
9211--9274
31
2.1
31
85
5
85
7
10
6
75
1.20
9270--9316
13
3.8
12
84
15
60
2
10
4
82
0.88
9211--9312
15
7.3
15
71
20
78
5
10
5
77
1.11
9256--9351
12
7.6
12
73
17
52
11
10
3
75
1.17
10322--10402
41
2.0
41
90
4
128
22
24
17
35
1.95
14299--14374
30
2.5
30
79
8
75
61
7
9
21
1.51
14351--14434
30
2.9
28
68
8
69
58
10
10
20
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17606--17659
23
2.4
24
78
12
60
59
9
3
27
1.45
23737--23780
20
2.3
19
81
11
54
22
25
6
45
1.77
26103--26209
17
6.2
17
71
15
62
28
2
2
66
1.20
26248--26327
31
2.5
33
80
14
94
27
5
3
63
1.32
26466--26517
9
5.3
9
74
17
50
13
5
1
78
1.01
26456--26562
13
8.0
13
67
18
51
13
7
3
75
1.14
26456--26517
27
2.3
27
81
10
74
14
4
1
79
0.98
26480--26511
17
1.9
16
93
6
55
15
6
3
75
1.14
26454--26589
53
2.5
55
75
10
136
13
8
2
75
1.16
36298--36382
32
2.5
33
81
5
82
30
4
4
60
1.38
36437--36525
41
2.1
43
82
12
114
23
4
4
67
1.28
36624--36697
35
2.1
35
82
9
89
16
5
1
77
1.03
36655--36710
22
2.6
21
83
13
69
12
8
0
78
0.96
36654--36687
13
2.6
13
90
0
50
14
2
0
82
0.79
36622--36759
9
16.0
9
69
17
53
15
7
2
74
1.14
36716--36767
20
2.8
18
80
13
54
15
7
1
75
1.12
51606--52130
171
3.0
171
84
8
654
43
13
15
27
1.84

Tables:   1

The End!