Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007256.1 Hibiscus syriacus cultivar Beakdansim tig00019229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92300
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Found at i:1774 original size:20 final size:20
Alignment explanation
Indices: 1721--1776 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
1711 GAATATAAGA
*
1721 GAACAAAATATAA-ATATGT
1 GAACAAGATATAACATATGT
* * *
1740 GATATATGAGA-AACATATGT
1 GA-ACAAGATATAACATATGT
1760 GAACAAGATATAACATA
1 GAACAAGATATAACATA
1777 CATGTTTATA
Statistics
Matches: 27, Mismatches: 7, Indels: 5
0.69 0.18 0.13
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (20 bp):
GAACAAGATATAACATATGT
Found at i:2204 original size:32 final size:32
Alignment explanation
Indices: 2128--2241 Score: 117
Period size: 32 Copynumber: 3.6 Consensus size: 32
2118 CCAAGAGTCG
** * *
2128 AGGATTACCTATGTCCTTCGATATATATGGAT
1 AGGATTACCTATGTCCTTCGGGACATATGGAC
*
2160 A--ATTTACCTATGTCATTCGGGACATATGGAC
1 AGGA-TTACCTATGTCCTTCGGGACATATGGAC
*
2191 AGGATTACCTATGTCCTTCGGGACATATAGAC
1 AGGATTACCTATGTCCTTCGGGACATATGGAC
* *
2223 ATTG-TTACCTATGTTCTTC
1 A-GGATTACCTATGTCCTTC
2242 AAAATATATG
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
30 1 0.01
31 24 0.35
32 42 0.61
33 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (32 bp):
AGGATTACCTATGTCCTTCGGGACATATGGAC
Found at i:2381 original size:10 final size:10
Alignment explanation
Indices: 2366--2399 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
2356 ACATGAGTAA
*
2366 ATATTATGTG
1 ATATTATATG
2376 ATATTATATG
1 ATATTATATG
*
2386 ATATGATATG
1 ATATTATATG
2396 ATAT
1 ATAT
2400 GTATGAGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (10 bp):
ATATTATATG
Found at i:6449 original size:21 final size:22
Alignment explanation
Indices: 6396--6449 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
6386 AAGTTATGCG
*
6396 ATGTGAATGATATGATAAAAGCT
1 ATGTGAAT-ATAAGATAAAAGCT
* * *
6419 ATGAGCATATAAGATATAA-CT
1 ATGTGAATATAAGATAAAAGCT
6440 ATGTGAATAT
1 ATGTGAATAT
6450 GTGAAGCGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
23 6 0.24
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (22 bp):
ATGTGAATATAAGATAAAAGCT
Found at i:6601 original size:32 final size:32
Alignment explanation
Indices: 6525--6638 Score: 126
Period size: 32 Copynumber: 3.6 Consensus size: 32
6515 CCAAGAGTCG
* * *
6525 AGGATTACCTATGTCCTTCGAGATATATGGAT
1 AGGATTACCTATGTCCTTCGGGACATATGGAC
*
6557 A--ATTTACCTATGTCATTCGGGACATATGGAC
1 AGGA-TTACCTATGTCCTTCGGGACATATGGAC
*
6588 AGGATTACCTATGTCCTTCGGGACATATAGAC
1 AGGATTACCTATGTCCTTCGGGACATATGGAC
* *
6620 ATTG-TTACCTATGTTCTTC
1 A-GGATTACCTATGTCCTTC
6639 AAAATATATG
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
30 1 0.01
31 25 0.36
32 42 0.60
33 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (32 bp):
AGGATTACCTATGTCCTTCGGGACATATGGAC
Found at i:6778 original size:10 final size:10
Alignment explanation
Indices: 6763--6796 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
6753 ACATGAGTAA
*
6763 ATATTATGTG
1 ATATTATATG
6773 ATATTATATG
1 ATATTATATG
*
6783 ATATGATATG
1 ATATTATATG
6793 ATAT
1 ATAT
6797 GTATGAGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (10 bp):
ATATTATATG
Found at i:11005 original size:32 final size:31
Alignment explanation
Indices: 10926--11030 Score: 147
Period size: 32 Copynumber: 3.3 Consensus size: 31
10916 AAGAGTCGAG
* *
10926 GGTTACCTATGTCCTTCGAGACATATGGATA
1 GGTTACCTATGTCCTTCGGGACATATGGACA
* *
10957 GTTTACATATGTCCTTCGGGACATATGGACA
1 GGTTACCTATGTCCTTCGGGACATATGGACA
*
10988 GGATTACCTATGTCCTTCAGGACATATGGACA
1 GG-TTACCTATGTCCTTCGGGACATATGGACA
11020 GTGTTACCTAT
1 G-GTTACCTAT
11031 ATTCTTGAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
31 28 0.43
32 36 0.55
33 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (31 bp):
GGTTACCTATGTCCTTCGGGACATATGGACA
Found at i:12356 original size:22 final size:22
Alignment explanation
Indices: 12328--12391 Score: 110
Period size: 22 Copynumber: 2.9 Consensus size: 22
12318 AGTCGAGGGT
12328 TTCATAGGTCTTTCGGGACATA
1 TTCATAGGTCTTTCGGGACATA
*
12350 TTCATAGGTCATTCGGGACATA
1 TTCATAGGTCTTTCGGGACATA
*
12372 TTCATAGGTCTTTTGGGACA
1 TTCATAGGTCTTTCGGGACA
12392 AATTTCACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (22 bp):
TTCATAGGTCTTTCGGGACATA
Found at i:13878 original size:2 final size:2
Alignment explanation
Indices: 13871--13898 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13861 CTAATAATTA
13871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13899 TCATATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14000 original size:2 final size:2
Alignment explanation
Indices: 13993--14017 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13983 AATAATAATA
13993 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14018 GACACAAACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14968 original size:8 final size:8
Alignment explanation
Indices: 14957--14982 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
14947 TCATTTAATT
14957 ATTTTTTA
1 ATTTTTTA
14965 ATTTTTTA
1 ATTTTTTA
14973 ATTTTTTA
1 ATTTTTTA
14981 AT
1 AT
14983 ACTTATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
ATTTTTTA
Found at i:16000 original size:25 final size:25
Alignment explanation
Indices: 15972--16029 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
15962 AATTTGTCAT
15972 TTATGTGTGCCAAAGAACAAAAATA
1 TTATGTGTGCCAAAGAACAAAAATA
15997 TTATGTGTGCCAAAGAACAAAAATA
1 TTATGTGTGCCAAAGAACAAAAATA
16022 TTATGTGT
1 TTATGTGT
16030 TTGTCATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.29
Consensus pattern (25 bp):
TTATGTGTGCCAAAGAACAAAAATA
Found at i:16744 original size:17 final size:17
Alignment explanation
Indices: 16717--16773 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
16707 TTTAATAATA
16717 AATATTTAAATATCTTAT
1 AATA-TTAAATATCTTAT
* *
16735 AATCTTAAATAT-TGAAT
1 AATATTAAATATCT-TAT
16752 AGATATTCAAATATCTTAT
1 A-ATATT-AAATATCTTAT
16771 AAT
1 AAT
16774 GTAAAAGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.35
18 9 0.29
19 9 0.29
20 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (17 bp):
AATATTAAATATCTTAT
Found at i:17715 original size:22 final size:21
Alignment explanation
Indices: 17681--17721 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
17671 ATAATTTTTT
17681 AAAAAATTAAATAAAAATACC
1 AAAAAATTAAATAAAAATACC
*
17702 AAAAATATTTAATAAAAATA
1 AAAAA-ATTAAATAAAAATA
17722 ATTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAAATTAAATAAAAATACC
Found at i:20179 original size:2 final size:2
Alignment explanation
Indices: 20174--20222 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
20164 GTTTTTTTAT
20174 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20216 TA TA TA T
1 TA TA TA T
20223 TTAATAGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20348 original size:20 final size:20
Alignment explanation
Indices: 20325--20366 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
20315 CAACGCGAAC
20325 TCCAAATTCGCAACACAGTT
1 TCCAAATTCGCAACACAGTT
*
20345 TCCAAATTCGCAACTCAGTT
1 TCCAAATTCGCAACACAGTT
20365 TC
1 TC
20367 GAAAATCGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.29
Consensus pattern (20 bp):
TCCAAATTCGCAACACAGTT
Found at i:20443 original size:57 final size:57
Alignment explanation
Indices: 20371--20501 Score: 199
Period size: 57 Copynumber: 2.3 Consensus size: 57
20361 AGTTTCGAAA
* * **
20371 ATCGTAACGCGATTTTCAAATCCGCAACGCTAATTATCAATATAGGTAAACAGTACT
1 ATCGCAACGCGATTTTCAAATCCGCAACGCTAATTACCAATATAGGTAAACACAACT
* *
20428 ATCGCAACGCGATTTTCAAATTCGCAACGCTAATTACCAATATAGGTACACACAACT
1 ATCGCAACGCGATTTTCAAATCCGCAACGCTAATTACCAATATAGGTAAACACAACT
*
20485 ATCGCAACGCGAATTTC
1 ATCGCAACGCGATTTTC
20502 GCAAATCGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 67 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (57 bp):
ATCGCAACGCGATTTTCAAATCCGCAACGCTAATTACCAATATAGGTAAACACAACT
Found at i:20801 original size:13 final size:14
Alignment explanation
Indices: 20783--20811 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
20773 TTGTCGAATT
20783 CGGATTTTTT-TAC
1 CGGATTTTTTCTAC
20796 CGGATTTTTTCTAC
1 CGGATTTTTTCTAC
20810 CG
1 CG
20812 TGTTTACCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.48
Consensus pattern (14 bp):
CGGATTTTTTCTAC
Found at i:21077 original size:2 final size:2
Alignment explanation
Indices: 21070--21122 Score: 79
Period size: 2 Copynumber: 26.5 Consensus size: 2
21060 CTATTTTTAA
* * *
21070 AT AT AT AT AT AC AC AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21112 AT AT AT AT AT A
1 AT AT AT AT AT A
21123 AGAATTAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:21208 original size:14 final size:14
Alignment explanation
Indices: 21189--21215 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21179 TTTGATTGTT
21189 AAAAAATATTTTTA
1 AAAAAATATTTTTA
21203 AAAAAATATTTTT
1 AAAAAATATTTTT
21216 CACATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAAAATATTTTTA
Found at i:21275 original size:41 final size:42
Alignment explanation
Indices: 21230--21322 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 42
21220 TTTTTTTGCT
* **
21230 TTTGATAGTTAAAAATTA-TTTT-CGGAAAATATTTTTCATTG
1 TTTGATAGTT-AAAATTAGTTTTACGAAAAATATTTTTCAAAG
** **
21271 TTTGATAACTGCAATTAGTTTTACGAAAAATATTTTTCAAAG
1 TTTGATAGTTAAAATTAGTTTTACGAAAAATATTTTTCAAAG
21313 TTTGATAGTT
1 TTTGATAGTT
21323 GTAATTGATT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
40 5 0.12
41 12 0.29
42 24 0.59
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.46
Consensus pattern (42 bp):
TTTGATAGTTAAAATTAGTTTTACGAAAAATATTTTTCAAAG
Found at i:21580 original size:13 final size:13
Alignment explanation
Indices: 21545--21625 Score: 69
Period size: 13 Copynumber: 6.2 Consensus size: 13
21535 TAATATAATT
21545 TTAATAATATTATA
1 TTAAT-ATATTATA
*
21559 TT-TTAATATTATA
1 TTAAT-ATATTATA
*
21572 TTAATATA-TA-C
1 TTAATATATTATA
21583 TTAGATATATTATA
1 TTA-ATATATTATA
*
21597 ATAATATATTATA
1 TTAATATATTATA
* *
21610 ATAATATATGATA
1 TTAATATATTATA
21623 TTA
1 TTA
21626 TATTTTTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
11 3 0.05
12 7 0.12
13 41 0.73
14 5 0.09
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (13 bp):
TTAATATATTATA
Found at i:21623 original size:33 final size:31
Alignment explanation
Indices: 21534--21624 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 31
21524 TAAAATACAT
*
21534 ATAATATAATTTTAATAATAT-T-ATATTTTA
1 ATAATAT-ATTATAATAATATATGATATTTTA
* *
21564 ATATTATATTAATATATACT-TA-GATATATTATA
1 ATAATATATT-ATA-ATAATATATGATAT-TT-TA
21597 ATAATATATTATAATAATATATGATATT
1 ATAATATATTATAATAATATATGATATT
21625 ATATTTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
29 3 0.06
30 9 0.19
31 12 0.25
32 8 0.17
33 16 0.33
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (31 bp):
ATAATATATTATAATAATATATGATATTTTA
Found at i:22093 original size:30 final size:30
Alignment explanation
Indices: 21999--22107 Score: 148
Period size: 30 Copynumber: 3.6 Consensus size: 30
21989 CCCAGAAAAT
* *
21999 GTAATTCATTTTACGTAAAACGGTTCT-AA
1 GTAATTCATTTTACGTAAAACAGTTTTCAA
* * *
22028 GTAATTTATTTTACGTAAAACGATTTTTCAT
1 GTAATTCATTTTACGTAAAAC-AGTTTTCAA
22059 GTAATTCATTTTACGTAAAACAGTTTTCAA
1 GTAATTCATTTTACGTAAAACAGTTTTCAA
*
22089 GTAATCCATTTTACGTAAA
1 GTAATTCATTTTACGTAAA
22108 TTATTTTTTA
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
29 20 0.29
30 28 0.41
31 21 0.30
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (30 bp):
GTAATTCATTTTACGTAAAACAGTTTTCAA
Found at i:23748 original size:15 final size:15
Alignment explanation
Indices: 23728--23768 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
23718 GACTCTTTGA
23728 TTTTAAGAATGA-TGG
1 TTTTAAGAAT-ATTGG
*
23743 TTTTAAGTATATTGG
1 TTTTAAGAATATTGG
23758 TTTTAAGAATA
1 TTTTAAGAATA
23769 AGTAATTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (15 bp):
TTTTAAGAATATTGG
Found at i:27946 original size:14 final size:14
Alignment explanation
Indices: 27927--27974 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
27917 TTAAATGATA
27927 AATAAAAAAATTAC
1 AATAAAAAAATTAC
27941 AATAAAAAAATT-C
1 AATAAAAAAATTAC
* *
27954 AAT-AAACAACTAC
1 AATAAAAAAATTAC
27967 AATAAAAA
1 AATAAAAA
27975 GTACTAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 6 0.21
13 8 0.28
14 15 0.52
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (14 bp):
AATAAAAAAATTAC
Found at i:27949 original size:13 final size:13
Alignment explanation
Indices: 27931--27974 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
27921 ATGATAAATA
27931 AAAAAATTACAAT
1 AAAAAATTACAAT
27944 AAAAAAATT-CAAT
1 -AAAAAATTACAAT
* *
27957 AAACAACTACAAT
1 AAAAAATTACAAT
27970 AAAAA
1 AAAAA
27975 GTACTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 6 0.23
13 12 0.46
14 8 0.31
ACGTcount: A:0.70, C:0.11, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAAAATTACAAT
Found at i:28499 original size:21 final size:21
Alignment explanation
Indices: 28470--28531 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
28460 ATTTGCAAAA
*
28470 AAATTAATTAAATAAAATATT
1 AAATAAATTAAATAAAATATT
28491 AAATAAATTAAATACAAAATATT
1 AAATAAATTAAAT--AAAATATT
28514 -AA-AAA-TATAATAAAATAT
1 AAATAAATTA-AATAAAATAT
28532 ACCTTAGACA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
19 7 0.19
20 2 0.05
21 18 0.49
22 2 0.05
23 8 0.22
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AAATAAATTAAATAAAATATT
Found at i:30308 original size:16 final size:16
Alignment explanation
Indices: 30287--30320 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
30277 TTTTCTCTAA
30287 TATGTTGTAATCGTAT
1 TATGTTGTAATCGTAT
30303 TATGTTGTAATCGTAT
1 TATGTTGTAATCGTAT
30319 TA
1 TA
30321 AAAATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.18, T:0.50
Consensus pattern (16 bp):
TATGTTGTAATCGTAT
Found at i:33532 original size:24 final size:24
Alignment explanation
Indices: 33497--33551 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
33487 CGTTTGATTA
* ** *
33497 TATGTTCGTTTATATTTGTTCATT
1 TATGTTCATTTATATCGGGTCATT
*
33521 TATGTTCATTTATGTCGGGTCATT
1 TATGTTCATTTATATCGGGTCATT
33545 TATGTTC
1 TATGTTC
33552 GGTCATTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.56
Consensus pattern (24 bp):
TATGTTCATTTATATCGGGTCATT
Found at i:33545 original size:14 final size:13
Alignment explanation
Indices: 33526--33575 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 13
33516 TCATTTATGT
33526 TCATTTATGTCGGG
1 TCATTTATGTC-GG
33540 TCATTTATGTTCGG
1 TCATTTATG-TCGG
*
33554 TCATTTATGTTCGT
1 TCATTTATG-TCGG
33568 TCATTTAT
1 TCATTTAT
33576 CTTAGAACAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 32 0.94
15 2 0.06
ACGTcount: A:0.16, C:0.14, G:0.18, T:0.52
Consensus pattern (13 bp):
TCATTTATGTCGG
Found at i:33922 original size:24 final size:23
Alignment explanation
Indices: 33849--33948 Score: 130
Period size: 24 Copynumber: 4.3 Consensus size: 23
33839 TGTGTTATTA
33849 GTTTATGTTCGTTTATTGTGTTC
1 GTTTATGTTCGTTTATTGTGTTC
** *
33872 GTTTATGTTTATTTATTATGTTC
1 GTTTATGTTCGTTTATTGTGTTC
*
33895 GTTTATGTTCGTTTGTTTGTGTTC
1 GTTTATGTTCGTTT-ATTGTGTTC
33919 GTTTATGTTCGTTCGT-TTGTGTTC
1 GTTTATGTTCGTT--TATTGTGTTC
33943 GTTTAT
1 GTTTAT
33949 CATTTAAATG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
23 32 0.48
24 34 0.51
26 1 0.01
ACGTcount: A:0.09, C:0.08, G:0.21, T:0.62
Consensus pattern (23 bp):
GTTTATGTTCGTTTATTGTGTTC
Found at i:36568 original size:21 final size:21
Alignment explanation
Indices: 36544--36594 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
36534 TCTTCTGAAG
*
36544 AAGAACCAGCATATGATAAGC
1 AAGAACCAGCACATGATAAGC
* *
36565 AAGAACCAACACATGATGAGC
1 AAGAACCAGCACATGATAAGC
36586 AAGAACCAG
1 AAGAACCAG
36595 AGAGTTCTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.22, G:0.20, T:0.10
Consensus pattern (21 bp):
AAGAACCAGCACATGATAAGC
Found at i:40155 original size:7 final size:7
Alignment explanation
Indices: 40143--40169 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
40133 TTATTTCTTG
40143 GGGTTTA
1 GGGTTTA
40150 GGGTTTA
1 GGGTTTA
40157 GGGTTTA
1 GGGTTTA
40164 GGGTTT
1 GGGTTT
40170 TTCTGCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.44, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:40578 original size:17 final size:18
Alignment explanation
Indices: 40558--40591 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
40548 TTTATAAGGT
40558 ATATTTTGTTA-TATTTA
1 ATATTTTGTTAGTATTTA
40575 ATATTTTGTTAGTATTT
1 ATATTTTGTTAGTATTT
40592 TATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (18 bp):
ATATTTTGTTAGTATTTA
Found at i:40605 original size:13 final size:13
Alignment explanation
Indices: 40587--40646 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
40577 ATTTTGTTAG
40587 TATTTTATTTAAT
1 TATTTTATTTAAT
*
40600 TATTTTA-TTATT
1 TATTTTATTTAAT
*
40612 TAACTTT-TTT-AT
1 T-ATTTTATTTAAT
*
40624 TATTTTATTTAAA
1 TATTTTATTTAAT
40637 TATTTTATTT
1 TATTTTATTT
40647 TTTTACAGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
11 4 0.11
12 10 0.26
13 24 0.63
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (13 bp):
TATTTTATTTAAT
Found at i:40610 original size:16 final size:16
Alignment explanation
Indices: 40591--40628 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
40581 TGTTAGTATT
40591 TTATTTAA-TTATTTTA
1 TTATTTAACTT-TTTTA
40607 TTATTTAACTTTTTTA
1 TTATTTAACTTTTTTA
40623 TTATTT
1 TTATTT
40629 TATTTAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.90
17 2 0.10
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTAACTTTTTTA
Found at i:40650 original size:21 final size:21
Alignment explanation
Indices: 40599--40651 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
40589 TTTTATTTAA
* * *
40599 TTATTTTATTATTTAACTTTT
1 TTATTTTTTTATTTAAATATT
*
40620 TTATTATTTTATTTAAATATT
1 TTATTTTTTTATTTAAATATT
40641 TTATTTTTTTA
1 TTATTTTTTTA
40652 CAGTTATAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (21 bp):
TTATTTTTTTATTTAAATATT
Found at i:40651 original size:8 final size:8
Alignment explanation
Indices: 40559--40632 Score: 53
Period size: 8 Copynumber: 9.1 Consensus size: 8
40549 TTATAAGGTA
*
40559 TATTTTGT
1 TATTTTAT
*
40567 TATATTTAA
1 TAT-TTTAT
*
40576 TATTTTGT
1 TATTTTAT
*
40584 TAGTATT-T
1 TA-TTTTAT
*
40592 TATTTAAT
1 TATTTTAT
40600 TATTTTAT
1 TATTTTAT
*
40608 TATTTAACT
1 TATTTTA-T
40617 T-TTTTAT
1 TATTTTAT
40624 TATTTTAT
1 TATTTTAT
40632 T
1 T
40633 TAAATATTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
7 4 0.08
8 36 0.71
9 11 0.22
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.69
Consensus pattern (8 bp):
TATTTTAT
Found at i:42827 original size:8 final size:7
Alignment explanation
Indices: 42800--42825 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
42790 AAACTGAATG
42800 AAAAATA
1 AAAAATA
42807 AAAAATA
1 AAAAATA
42814 AAAAATA
1 AAAAATA
42821 AAAAA
1 AAAAA
42826 ATTGAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:49880 original size:22 final size:23
Alignment explanation
Indices: 49855--49902 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
49845 TTAAGAATAA
*
49855 AATTAAA-TGAAATAAGTTTTTT
1 AATTAAATTGAAATAAGGTTTTT
* *
49877 AATTAAATTGAATTTAGGTTTTT
1 AATTAAATTGAAATAAGGTTTTT
49900 AAT
1 AAT
49903 GATTAGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (23 bp):
AATTAAATTGAAATAAGGTTTTT
Found at i:50188 original size:22 final size:20
Alignment explanation
Indices: 50155--50199 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 20
50145 ATTTAAAATA
50155 TTAAAATAATTTATT-TATTT
1 TTAAAATAATTT-TTATATTT
50175 TTAAAATATTATTTTTATATTT
1 TTAAAATA--ATTTTTATATTT
50197 TTA
1 TTA
50200 TTAATAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.36
21 2 0.09
22 12 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTAAAATAATTTTTATATTT
Found at i:50191 original size:20 final size:21
Alignment explanation
Indices: 50155--50197 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
50145 ATTTAAAATA
50155 TTAAAATAATTTATTTAT-TT
1 TTAAAATAATTTATTTATATT
*
50175 TTAAAAT-ATTATTTTTATATT
1 TTAAAATAATT-TATTTATATT
50196 TT
1 TT
50198 TATTAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 13 0.65
21 4 0.20
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTAAAATAATTTATTTATATT
Found at i:55125 original size:9 final size:9
Alignment explanation
Indices: 55065--55126 Score: 63
Period size: 9 Copynumber: 6.7 Consensus size: 9
55055 TAAAATGGTG
55065 TATTTTT-T
1 TATTTTTAT
*
55073 TATTTATAT
1 TATTTTTAT
*
55082 TTTTTATTAT
1 TATTT-TTAT
55092 TATTCCTTTAT
1 TATT--TTTAT
*
55103 TATTATTAT
1 TATTTTTAT
55112 TATTTTTAT
1 TATTTTTAT
55121 TATTTT
1 TATTTT
55127 AATCTATGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
8 6 0.14
9 23 0.52
10 6 0.14
11 8 0.18
12 1 0.02
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (9 bp):
TATTTTTAT
Found at i:65978 original size:16 final size:18
Alignment explanation
Indices: 65957--65990 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
65947 TTATAATAGA
65957 TTAAT-AAATGTT-TAAT
1 TTAATAAAATGTTCTAAT
65973 TTAATAAAATGTTCTAAT
1 TTAATAAAATGTTCTAAT
65991 AGAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 7 0.44
18 4 0.25
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (18 bp):
TTAATAAAATGTTCTAAT
Found at i:74536 original size:16 final size:16
Alignment explanation
Indices: 74488--74539 Score: 63
Period size: 15 Copynumber: 3.2 Consensus size: 16
74478 AAAATTATCG
74488 ACCCGAAAATTCCGGGT
1 ACCCGAAAA-TCCGGGT
*
74505 ATCC-AGAAAT-CGGGT
1 ACCCGA-AAATCCGGGT
74520 ACCCGAAAATCCGGGT
1 ACCCGAAAATCCGGGT
74536 ACCC
1 ACCC
74540 AGATTTGCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 12 0.40
16 12 0.40
17 6 0.20
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (16 bp):
ACCCGAAAATCCGGGT
Found at i:83693 original size:40 final size:40
Alignment explanation
Indices: 83633--83726 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
83623 AATATTAAGA
*
83633 AAAATATCACA-TTTTTTATTGTAAAGTG-AAATGTTATT
1 AAAATATCATATTTTTTTATTGTAAAGTGAAAATGTTATT
* * *
83671 AAAATTTTCATATTTTTTTATTGTTAATTGAAAATGTTATT
1 AAAA-TATCATATTTTTTTATTGTAAAGTGAAAATGTTATT
83712 AAAATATCATATTTT
1 AAAATATCATATTTT
83727 AAATTATGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 4 0.08
39 5 0.10
40 25 0.52
41 14 0.29
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.50
Consensus pattern (40 bp):
AAAATATCATATTTTTTTATTGTAAAGTGAAAATGTTATT
Found at i:84665 original size:29 final size:30
Alignment explanation
Indices: 84589--84658 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 30
84579 ATTTTCAAAA
*
84589 AAAAAAATTTGGTTCAATTAAAGGTTAAAG
1 AAAAAAGTTTGGTTCAATTAAAGGTTAAAG
84619 -AAAAAGTTTGGTTCAATTAAAGGTTAAAG
1 AAAAAAGTTTGGTTCAATTAAAGGTTAAAG
84648 AAAAAAGTTTG
1 AAAAAAGTTTG
84659 ATTAATTTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 28 0.74
30 10 0.26
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.30
Consensus pattern (30 bp):
AAAAAAGTTTGGTTCAATTAAAGGTTAAAG
Found at i:86915 original size:16 final size:16
Alignment explanation
Indices: 86892--86946 Score: 67
Period size: 15 Copynumber: 3.4 Consensus size: 16
86882 GGTGTGCAAA
86892 TCCGGGTACCCGGATT
1 TCCGGGTACCCGGATT
*
86908 TTCGGGTACCC-GATT
1 TCCGGGTACCCGGATT
* *
86923 TCCGGATACCCGGAACT
1 TCCGGGTACCCGG-ATT
86940 TCCGGGT
1 TCCGGGT
86947 CGACAATTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
15 13 0.41
16 11 0.34
17 8 0.25
ACGTcount: A:0.15, C:0.31, G:0.29, T:0.25
Consensus pattern (16 bp):
TCCGGGTACCCGGATT
Found at i:87023 original size:17 final size:17
Alignment explanation
Indices: 86974--87025 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
86964 GTGTCCCAAT
*
86974 CCGGATGTTACGGGTAC
1 CCGGATATTACGGGTAC
* *
86991 CCGG-TAAT-CAGGTAC
1 CCGGATATTACGGGTAC
*
87006 CCGGATTTTACGGGTAC
1 CCGGATATTACGGGTAC
87023 CCG
1 CCG
87026 ATACCCAGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
15 10 0.37
16 4 0.15
17 13 0.48
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (17 bp):
CCGGATATTACGGGTAC
Found at i:87502 original size:7 final size:7
Alignment explanation
Indices: 87393--89183 Score: 813
Period size: 7 Copynumber: 258.6 Consensus size: 7
87383 AACCGGTAGA
87393 GCTCGGG
1 GCTCGGG
87400 GCTCGGG
1 GCTCGGG
87407 GCTCGGG
1 GCTCGGG
87414 GCTCGGG
1 GCTCGGG
87421 GCTCGGG
1 GCTCGGG
87428 GCTCGGG
1 GCTCGGG
87435 GC-CGGG
1 GCTCGGG
87441 G--CGGG
1 GCTCGGG
87446 GC-CGGG
1 GCTCGGG
87452 GCTCGGG
1 GCTCGGG
87459 GCTCGGG
1 GCTCGGG
87466 GCTCGGG
1 GCTCGGG
87473 GC-CGGG
1 GCTCGGG
87479 G--CGGG
1 GCTCGGG
87484 GCTCGGG
1 GCTCGGG
87491 G--CGGG
1 GCTCGGG
*
87496 GTTCGGG
1 GCTCGGG
**
87503 GCTTAGG
1 GCTCGGG
*
87510 GCT-TGG
1 GCTCGGG
*
87516 GCTTGGG
1 GCTCGGG
*
87523 GCTTGGG
1 GCTCGGG
*
87530 GCTTGGG
1 GCTCGGG
*
87537 GCTTGGG
1 GCTCGGG
*
87544 GCTTGGG
1 GCTCGGG
*
87551 GCTTGGG
1 GCTCGGG
*
87558 GCTTGGG
1 GCTCGGG
*
87565 GCTTGGG
1 GCTCGGG
*
87572 GCTTGGG
1 GCTCGGG
*
87579 GCTTGGG
1 GCTCGGG
*
87586 GCTTGGG
1 GCTCGGG
*
87593 GCTTGGG
1 GCTCGGG
*
87600 GCTTGGG
1 GCTCGGG
*
87607 GCTTGGG
1 GCTCGGG
*
87614 GCTTGGG
1 GCTCGGG
*
87621 GCTTGGG
1 GCTCGGG
*
87628 GCTTGGG
1 GCTCGGG
*
87635 GCTTGGG
1 GCTCGGG
*
87642 GCTTGGG
1 GCTCGGG
*
87649 GCTTGGG
1 GCTCGGG
*
87656 GCTTGGG
1 GCTCGGG
*
87663 GCTTGGG
1 GCTCGGG
*
87670 GCT-TGG
1 GCTCGGG
*
87676 GCTTGGG
1 GCTCGGG
*
87683 GCTTGGG
1 GCTCGGG
*
87690 GCTTGGG
1 GCTCGGG
*
87697 GCTTGGGG
1 GC-TCGGG
*
87705 GCTTGGGG
1 GC-TCGGG
*
87713 GCTTGGGG
1 GC-TCGGG
*
87721 GCTTGGGG
1 GC-TCGGG
*
87729 GCTTGGGG
1 GC-TCGGG
*
87737 GCTTGGGG
1 GC-TCGGG
*
87745 GCTTGGGG
1 GC-TCGGG
*
87753 GCTTGGG
1 GCTCGGG
*
87760 GCTTGGGG
1 GC-TCGGG
*
87768 GCTTGGGG
1 GC-TCGGG
*
87776 GCTTGGG
1 GCTCGGG
*
87783 GCTTGGG
1 GCTCGGG
*
87790 GCTTGGG
1 GCTCGGG
*
87797 GCTTGGG
1 GCTCGGG
*
87804 GCTTGGG
1 GCTCGGG
*
87811 GCTTGGG
1 GCTCGGG
*
87818 GCTTGGG
1 GCTCGGG
*
87825 GCTTGGG
1 GCTCGGG
*
87832 GCT-TGG
1 GCTCGGG
87838 G-T-GGG
1 GCTCGGG
*
87843 GCTTGGG
1 GCTCGGG
*
87850 GCT-TGG
1 GCTCGGG
* *
87856 GTTTGGG
1 GCTCGGG
* *
87863 GTTTGGG
1 GCTCGGG
* *
87870 GTTTGGGGGG
1 G-CT--CGGG
* *
87880 GTTTGGG
1 GCTCGGG
**
87887 G-TTTGG
1 GCTCGGG
* *
87893 GTTTGGG
1 GCTCGGG
** *
87900 TTTGGGG
1 GCTCGGG
* *
87907 GTTTGGG
1 GCTCGGG
**
87914 G-TTTGG
1 GCTCGGG
* *
87920 GTTTGGG
1 GCTCGGG
* **
87927 GTTTAGG
1 GCTCGGG
* **
87934 GTTTAGG
1 GCTCGGG
*
87941 GCTCAGG
1 GCTCGGG
87948 G-TCAGGG
1 GCTC-GGG
87955 G-T-GTAGG
1 GCTCG--GG
*
87962 G-TCAGG
1 GCTCGGG
*
87968 GCTCAGG
1 GCTCGGG
*
87975 GCTCAGG
1 GCTCGGG
*
87982 GCTCAGG
1 GCTCGGG
*
87989 GCTCAGG
1 GCTCGGG
*
87996 GCTCAGG
1 GCTCGGG
*
88003 GCTCAGG
1 GCTCGGG
*
88010 GCTCAGG
1 GCTCGGG
*
88017 GCTCAGG
1 GCTCGGG
*
88024 GCTCAGG
1 GCTCGGG
*
88031 GCTCAGG
1 GCTCGGG
*
88038 GCTCAGG
1 GCTCGGG
*
88045 GCTCAGG
1 GCTCGGG
*
88052 GCTCAGG
1 GCTCGGG
*
88059 GCTCAGG
1 GCTCGGG
*
88066 GCTCAGG
1 GCTCGGG
*
88073 GCTCAGG
1 GCTCGGG
*
88080 GCTCAGG
1 GCTCGGG
*
88087 GCTCAGG
1 GCTCGGG
*
88094 GCTCAGG
1 GCTCGGG
*
88101 GCTCAGG
1 GCTCGGG
*
88108 GCTCAGG
1 GCTCGGG
*
88115 GCTCAGG
1 GCTCGGG
*
88122 GCTCAGG
1 GCTCGGG
*
88129 GCTCAGG
1 GCTCGGG
*
88136 GCTCAGG
1 GCTCGGG
*
88143 GCTCAGG
1 GCTCGGG
*
88150 GCTCAGG
1 GCTCGGG
*
88157 GCTCAGG
1 GCTCGGG
*
88164 GCTCAGG
1 GCTCGGG
*
88171 GCTCAGG
1 GCTCGGG
*
88178 GCTCAGG
1 GCTCGGG
*
88185 GCTCAGG
1 GCTCGGG
*
88192 GCTCAGG
1 GCTCGGG
*
88199 GCTCAGG
1 GCTCGGG
*
88206 GCTCAGG
1 GCTCGGG
*
88213 GCTCAGG
1 GCTCGGG
*
88220 GCTCAGG
1 GCTCGGG
*
88227 GCTCAGG
1 GCTCGGG
*
88234 GCTCAGG
1 GCTCGGG
*
88241 GCTCAGG
1 GCTCGGG
*
88248 GCTCAGG
1 GCTCGGG
*
88255 GCTCAGG
1 GCTCGGG
*
88262 GCTCAGG
1 GCTCGGG
*
88269 GCTCAGG
1 GCTCGGG
*
88276 GCTCAGG
1 GCTCGGG
*
88283 GCTCAGG
1 GCTCGGG
*
88290 GCTCAGG
1 GCTCGGG
*
88297 GCTCAGG
1 GCTCGGG
*
88304 GCTCAGG
1 GCTCGGG
*
88311 GCTCAGG
1 GCTCGGG
*
88318 GCTCAGG
1 GCTCGGG
*
88325 GCTCAGG
1 GCTCGGG
*
88332 GCTCAGG
1 GCTCGGG
*
88339 GCTCAGG
1 GCTCGGG
*
88346 GCTCAGG
1 GCTCGGG
*
88353 GCTCAGG
1 GCTCGGG
*
88360 GCTCAGG
1 GCTCGGG
*
88367 GCTCAGG
1 GCTCGGG
*
88374 GCTCAGG
1 GCTCGGG
*
88381 GCTCAGG
1 GCTCGGG
88388 GCTCAGGG
1 GCTC-GGG
*
88396 CCAGCTCAGG
1 ---GCTCGGG
*
88406 GCTCAGG
1 GCTCGGG
*
88413 GCTCAGG
1 GCTCGGG
*
88420 GCTCAGG
1 GCTCGGG
*
88427 GCTCAGG
1 GCTCGGG
*
88434 GCTCAGG
1 GCTCGGG
*
88441 GCTCAGG
1 GCTCGGG
*
88448 GCTCAGG
1 GCTCGGG
*
88455 G--CAGG
1 GCTCGGG
*
88460 GCTCAGG
1 GCTCGGG
*
88467 GCTCAGG
1 GCTCGGG
*
88474 GCTC-AG
1 GCTCGGG
*
88480 GCTCAGG
1 GCTCGGG
*
88487 GCTCAGG
1 GCTCGGG
*
88494 GCTCAGG
1 GCTCGGG
*
88501 GCTCAGG
1 GCTCGGG
*
88508 GCTCAGG
1 GCTCGGG
*
88515 GCTCAGG
1 GCTCGGG
*
88522 GCTC-AG
1 GCTCGGG
*
88528 GCTCAGG
1 GCTCGGG
*
88535 GCTCAGG
1 GCTCGGG
*
88542 GCTCAGG
1 GCTCGGG
88549 GCTC-GG
1 GCTCGGG
*
88555 GCTCAGG
1 GCTCGGG
*
88562 GCTCAGG
1 GCTCGGG
*
88569 GCTCAGG
1 GCTCGGG
*
88576 GCTCAGG
1 GCTCGGG
*
88583 GCTCAGG
1 GCTCGGG
*
88590 GCTCAGG
1 GCTCGGG
*
88597 GCTCAGG
1 GCTCGGG
*
88604 GCTCAGG
1 GCTCGGG
*
88611 GCTCAGG
1 GCTCGGG
*
88618 GCTC-AG
1 GCTCGGG
*
88624 GCTCAGG
1 GCTCGGG
*
88631 GCTCAGG
1 GCTCGGG
*
88638 GCTCAGG
1 GCTCGGG
*
88645 GCTC-AG
1 GCTCGGG
*
88651 GCTCAGG
1 GCTCGGG
*
88658 GCTCAGG
1 GCTCGGG
*
88665 GCTCAGG
1 GCTCGGG
*
88672 GCTCAGG
1 GCTCGGG
*
88679 GCTCAGG
1 GCTCGGG
*
88686 GCTCAGG
1 GCTCGGG
*
88693 GCTCAGG
1 GCTCGGG
*
88700 GCTCAGG
1 GCTCGGG
*
88707 GCTCAGG
1 GCTCGGG
*
88714 GCTCAGG
1 GCTCGGG
*
88721 GCTCAGG
1 GCTCGGG
*
88728 GCTCAGG
1 GCTCGGG
*
88735 GCTCAGG
1 GCTCGGG
*
88742 GCTCAGG
1 GCTCGGG
*
88749 GCTCAGG
1 GCTCGGG
*
88756 GCTCAGG
1 GCTCGGG
*
88763 GCTCAGG
1 GCTCGGG
*
88770 GCTCAGG
1 GCTCGGG
*
88777 GCTC-AG
1 GCTCGGG
* *
88783 TCTCAGG
1 GCTCGGG
*
88790 GCTCAGG
1 GCTCGGG
88797 GCTCAGGG
1 GCTC-GGG
* *
88805 CACTCAGG
1 -GCTCGGG
*
88813 GCTCAGG
1 GCTCGGG
*
88820 G-TCAGG
1 GCTCGGG
*
88826 GCTCAGG
1 GCTCGGG
*
88833 GCTCAGG
1 GCTCGGG
*
88840 GCTCAGG
1 GCTCGGG
*
88847 GCTCAGG
1 GCTCGGG
88854 GCTC-GG
1 GCTCGGG
*
88860 GCTC-AG
1 GCTCGGG
*
88866 GCTCAGG
1 GCTCGGG
*
88873 GCTCAGG
1 GCTCGGG
*
88880 GCTCAGG
1 GCTCGGG
*
88887 GCTC-AG
1 GCTCGGG
*
88893 GCTCAGG
1 GCTCGGG
*
88900 GCTCAGG
1 GCTCGGG
*
88907 GCTCAGG
1 GCTCGGG
*
88914 GCTCAGG
1 GCTCGGG
*
88921 GCTCAGG
1 GCTCGGG
*
88928 GCTCAGG
1 GCTCGGG
*
88935 GCTCAGG
1 GCTCGGG
*
88942 GCTCAGG
1 GCTCGGG
*
88949 GCTCAGG
1 GCTCGGG
*
88956 GCTC-AG
1 GCTCGGG
*
88962 GCTCAGG
1 GCTCGGG
88969 GCTCAGGG
1 GCTC-GGG
*
88977 G--CAGG
1 GCTCGGG
*
88982 GCTCAGG
1 GCTCGGG
*
88989 GCTCAGG
1 GCTCGGG
*
88996 GC-CAGG
1 GCTCGGG
*
89002 GCTCAGG
1 GCTCGGG
*
89009 GCTCAGG
1 GCTCGGG
*
89016 GCTCAGG
1 GCTCGGG
*
89023 GCTCAGG
1 GCTCGGG
*
89030 GCTCAGG
1 GCTCGGG
*
89037 GCTC-AG
1 GCTCGGG
*
89043 GCTCAGG
1 GCTCGGG
*
89050 GCTC-AG
1 GCTCGGG
*
89056 GCTCAGG
1 GCTCGGG
*
89063 GCTCAGG
1 GCTCGGG
*
89070 GCTCAGG
1 GCTCGGG
*
89077 GCTCAGG
1 GCTCGGG
*
89084 GCTCAGG
1 GCTCGGG
*
89091 GCTCAGG
1 GCTCGGG
*
89098 GCTCAGG
1 GCTCGGG
*
89105 GCTCAGG
1 GCTCGGG
*
89112 GCT-AGG
1 GCTCGGG
*
89118 GCTCAGG
1 GCTCGGG
*
89125 GCTC-AG
1 GCTCGGG
*
89131 GCTCAGG
1 GCTCGGG
*
89138 GCTCAGG
1 GCTCGGG
*
89145 GCTCAGG
1 GCTCGGG
*
89152 GCTCAGG
1 GCTCGGG
*
89159 GCTTCAGG
1 GC-TCGGG
*
89167 G-TCAGG
1 GCTCGGG
*
89173 GCTCAGG
1 GCTCGGG
89180 GCTC
1 GCTC
89184 AGGCTCAGGT
Statistics
Matches: 1670, Mismatches: 63, Indels: 102
0.91 0.03 0.06
Matches are distributed among these distances:
5 28 0.02
6 140 0.08
7 1402 0.84
8 85 0.05
9 5 0.00
10 6 0.00
11 4 0.00
ACGTcount: A:0.10, C:0.24, G:0.47, T:0.18
Consensus pattern (7 bp):
GCTCGGG
Found at i:87949 original size:14 final size:14
Alignment explanation
Indices: 87878--87941 Score: 62
Period size: 13 Copynumber: 4.7 Consensus size: 14
87868 GGGTTTGGGG
*
87878 GGGTTTGGGGTTT-
1 GGGTTTAGGGTTTA
*
87891 GGGTTT-GGGTTTGG
1 GGGTTTAGGGTTT-A
*
87905 GGGTTTGGGGTTT-
1 GGGTTTAGGGTTTA
*
87918 GGGTTTGGGGTTTA
1 GGGTTTAGGGTTTA
87932 GGGTTTAGGG
1 GGGTTTAGGG
87942 CTCAGGGTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
12 6 0.13
13 19 0.41
14 15 0.33
15 6 0.13
ACGTcount: A:0.03, C:0.00, G:0.55, T:0.42
Consensus pattern (14 bp):
GGGTTTAGGGTTTA
Found at i:89184 original size:7 final size:7
Alignment explanation
Indices: 87938--89362 Score: 2417
Period size: 7 Copynumber: 208.6 Consensus size: 7
87928 TTTAGGGTTT
87938 AGGGCTC
1 AGGGCTC
87945 AGGG-TC
1 AGGGCTC
* *
87951 AGGGGTGT
1 AGGGCT-C
87959 AGGG-TC
1 AGGGCTC
87965 AGGGCTC
1 AGGGCTC
87972 AGGGCTC
1 AGGGCTC
87979 AGGGCTC
1 AGGGCTC
87986 AGGGCTC
1 AGGGCTC
87993 AGGGCTC
1 AGGGCTC
88000 AGGGCTC
1 AGGGCTC
88007 AGGGCTC
1 AGGGCTC
88014 AGGGCTC
1 AGGGCTC
88021 AGGGCTC
1 AGGGCTC
88028 AGGGCTC
1 AGGGCTC
88035 AGGGCTC
1 AGGGCTC
88042 AGGGCTC
1 AGGGCTC
88049 AGGGCTC
1 AGGGCTC
88056 AGGGCTC
1 AGGGCTC
88063 AGGGCTC
1 AGGGCTC
88070 AGGGCTC
1 AGGGCTC
88077 AGGGCTC
1 AGGGCTC
88084 AGGGCTC
1 AGGGCTC
88091 AGGGCTC
1 AGGGCTC
88098 AGGGCTC
1 AGGGCTC
88105 AGGGCTC
1 AGGGCTC
88112 AGGGCTC
1 AGGGCTC
88119 AGGGCTC
1 AGGGCTC
88126 AGGGCTC
1 AGGGCTC
88133 AGGGCTC
1 AGGGCTC
88140 AGGGCTC
1 AGGGCTC
88147 AGGGCTC
1 AGGGCTC
88154 AGGGCTC
1 AGGGCTC
88161 AGGGCTC
1 AGGGCTC
88168 AGGGCTC
1 AGGGCTC
88175 AGGGCTC
1 AGGGCTC
88182 AGGGCTC
1 AGGGCTC
88189 AGGGCTC
1 AGGGCTC
88196 AGGGCTC
1 AGGGCTC
88203 AGGGCTC
1 AGGGCTC
88210 AGGGCTC
1 AGGGCTC
88217 AGGGCTC
1 AGGGCTC
88224 AGGGCTC
1 AGGGCTC
88231 AGGGCTC
1 AGGGCTC
88238 AGGGCTC
1 AGGGCTC
88245 AGGGCTC
1 AGGGCTC
88252 AGGGCTC
1 AGGGCTC
88259 AGGGCTC
1 AGGGCTC
88266 AGGGCTC
1 AGGGCTC
88273 AGGGCTC
1 AGGGCTC
88280 AGGGCTC
1 AGGGCTC
88287 AGGGCTC
1 AGGGCTC
88294 AGGGCTC
1 AGGGCTC
88301 AGGGCTC
1 AGGGCTC
88308 AGGGCTC
1 AGGGCTC
88315 AGGGCTC
1 AGGGCTC
88322 AGGGCTC
1 AGGGCTC
88329 AGGGCTC
1 AGGGCTC
88336 AGGGCTC
1 AGGGCTC
88343 AGGGCTC
1 AGGGCTC
88350 AGGGCTC
1 AGGGCTC
88357 AGGGCTC
1 AGGGCTC
88364 AGGGCTC
1 AGGGCTC
88371 AGGGCTC
1 AGGGCTC
88378 AGGGCTC
1 AGGGCTC
88385 AGGGCTC
1 AGGGCTC
88392 AGGGC-C
1 AGGGCTC
88398 A--GCTC
1 AGGGCTC
88403 AGGGCTC
1 AGGGCTC
88410 AGGGCTC
1 AGGGCTC
88417 AGGGCTC
1 AGGGCTC
88424 AGGGCTC
1 AGGGCTC
88431 AGGGCTC
1 AGGGCTC
88438 AGGGCTC
1 AGGGCTC
88445 AGGGCTC
1 AGGGCTC
88452 AGGG--C
1 AGGGCTC
88457 AGGGCTC
1 AGGGCTC
88464 AGGGCTC
1 AGGGCTC
88471 AGGGCTC
1 AGGGCTC
88478 A-GGCTC
1 AGGGCTC
88484 AGGGCTC
1 AGGGCTC
88491 AGGGCTC
1 AGGGCTC
88498 AGGGCTC
1 AGGGCTC
88505 AGGGCTC
1 AGGGCTC
88512 AGGGCTC
1 AGGGCTC
88519 AGGGCTC
1 AGGGCTC
88526 A-GGCTC
1 AGGGCTC
88532 AGGGCTC
1 AGGGCTC
88539 AGGGCTC
1 AGGGCTC
88546 AGGGCTC
1 AGGGCTC
88553 -GGGCTC
1 AGGGCTC
88559 AGGGCTC
1 AGGGCTC
88566 AGGGCTC
1 AGGGCTC
88573 AGGGCTC
1 AGGGCTC
88580 AGGGCTC
1 AGGGCTC
88587 AGGGCTC
1 AGGGCTC
88594 AGGGCTC
1 AGGGCTC
88601 AGGGCTC
1 AGGGCTC
88608 AGGGCTC
1 AGGGCTC
88615 AGGGCTC
1 AGGGCTC
88622 A-GGCTC
1 AGGGCTC
88628 AGGGCTC
1 AGGGCTC
88635 AGGGCTC
1 AGGGCTC
88642 AGGGCTC
1 AGGGCTC
88649 A-GGCTC
1 AGGGCTC
88655 AGGGCTC
1 AGGGCTC
88662 AGGGCTC
1 AGGGCTC
88669 AGGGCTC
1 AGGGCTC
88676 AGGGCTC
1 AGGGCTC
88683 AGGGCTC
1 AGGGCTC
88690 AGGGCTC
1 AGGGCTC
88697 AGGGCTC
1 AGGGCTC
88704 AGGGCTC
1 AGGGCTC
88711 AGGGCTC
1 AGGGCTC
88718 AGGGCTC
1 AGGGCTC
88725 AGGGCTC
1 AGGGCTC
88732 AGGGCTC
1 AGGGCTC
88739 AGGGCTC
1 AGGGCTC
88746 AGGGCTC
1 AGGGCTC
88753 AGGGCTC
1 AGGGCTC
88760 AGGGCTC
1 AGGGCTC
88767 AGGGCTC
1 AGGGCTC
88774 AGGGCTC
1 AGGGCTC
*
88781 A-GTCTC
1 AGGGCTC
88787 AGGGCTC
1 AGGGCTC
88794 AGGGCTC
1 AGGGCTC
88801 AGGGCACTC
1 AGGG--CTC
88810 AGGGCTC
1 AGGGCTC
88817 AGGG-TC
1 AGGGCTC
88823 AGGGCTC
1 AGGGCTC
88830 AGGGCTC
1 AGGGCTC
88837 AGGGCTC
1 AGGGCTC
88844 AGGGCTC
1 AGGGCTC
88851 AGGGCTC
1 AGGGCTC
88858 -GGGCTC
1 AGGGCTC
88864 A-GGCTC
1 AGGGCTC
88870 AGGGCTC
1 AGGGCTC
88877 AGGGCTC
1 AGGGCTC
88884 AGGGCTC
1 AGGGCTC
88891 A-GGCTC
1 AGGGCTC
88897 AGGGCTC
1 AGGGCTC
88904 AGGGCTC
1 AGGGCTC
88911 AGGGCTC
1 AGGGCTC
88918 AGGGCTC
1 AGGGCTC
88925 AGGGCTC
1 AGGGCTC
88932 AGGGCTC
1 AGGGCTC
88939 AGGGCTC
1 AGGGCTC
88946 AGGGCTC
1 AGGGCTC
88953 AGGGCTC
1 AGGGCTC
88960 A-GGCTC
1 AGGGCTC
88966 AGGGCTC
1 AGGGCTC
*
88973 AGGG-GC
1 AGGGCTC
88979 AGGGCTC
1 AGGGCTC
88986 AGGGCTC
1 AGGGCTC
88993 AGGGC-C
1 AGGGCTC
88999 AGGGCTC
1 AGGGCTC
89006 AGGGCTC
1 AGGGCTC
89013 AGGGCTC
1 AGGGCTC
89020 AGGGCTC
1 AGGGCTC
89027 AGGGCTC
1 AGGGCTC
89034 AGGGCTC
1 AGGGCTC
89041 A-GGCTC
1 AGGGCTC
89047 AGGGCTC
1 AGGGCTC
89054 A-GGCTC
1 AGGGCTC
89060 AGGGCTC
1 AGGGCTC
89067 AGGGCTC
1 AGGGCTC
89074 AGGGCTC
1 AGGGCTC
89081 AGGGCTC
1 AGGGCTC
89088 AGGGCTC
1 AGGGCTC
89095 AGGGCTC
1 AGGGCTC
89102 AGGGCTC
1 AGGGCTC
89109 AGGGCT-
1 AGGGCTC
89115 AGGGCTC
1 AGGGCTC
89122 AGGGCTC
1 AGGGCTC
89129 A-GGCTC
1 AGGGCTC
89135 AGGGCTC
1 AGGGCTC
89142 AGGGCTC
1 AGGGCTC
89149 AGGGCTC
1 AGGGCTC
89156 AGGGCTTC
1 AGGGC-TC
89164 AGGG-TC
1 AGGGCTC
89170 AGGGCTC
1 AGGGCTC
89177 AGGGCTC
1 AGGGCTC
89184 A-GGCTC
1 AGGGCTC
89190 A-GG-TC
1 AGGGCTC
89195 A-GG-TC
1 AGGGCTC
89200 AGGGCTC
1 AGGGCTC
89207 A-GGCTC
1 AGGGCTC
89213 AGGGCTC
1 AGGGCTC
89220 AGGGCTC
1 AGGGCTC
89227 -GGG--C
1 AGGGCTC
89231 AGGGCTC
1 AGGGCTC
89238 AGGGCTC
1 AGGGCTC
89245 AGGGCTC
1 AGGGCTC
89252 AGGGCTC
1 AGGGCTC
89259 AGGG-TC
1 AGGGCTC
*
89265 AGGGTTC
1 AGGGCTC
89272 AGGGCTC
1 AGGGCTC
89279 A-GGCTC
1 AGGGCTC
*
89285 CGGGCTC
1 AGGGCTC
89292 AGGGCTC
1 AGGGCTC
89299 AGGGCTC
1 AGGGCTC
*
89306 AGGGTTCC
1 AGGGCT-C
89314 AGGG-TC
1 AGGGCTC
89320 AGGG-TC
1 AGGGCTC
*
89326 AGGGTTC
1 AGGGCTC
*
89333 AGGGTTC
1 AGGGCTC
*
89340 --GGTTC
1 AGGGCTC
*
89345 AGGGTTC
1 AGGGCTC
*
89352 AGGGTTC
1 AGGGCTC
89359 AGGG
1 AGGG
89363 TTCGGGTAGG
Statistics
Matches: 1367, Mismatches: 10, Indels: 82
0.94 0.01 0.06
Matches are distributed among these distances:
4 3 0.00
5 23 0.02
6 159 0.12
7 1160 0.85
8 15 0.01
9 7 0.01
ACGTcount: A:0.14, C:0.28, G:0.43, T:0.15
Consensus pattern (7 bp):
AGGGCTC
Found at i:89363 original size:7 final size:7
Alignment explanation
Indices: 89340--92300 Score: 4222
Period size: 7 Copynumber: 440.3 Consensus size: 7
89330 TTCAGGGTTC
*
89340 GGTTCAG
1 GGTTTAG
*
89347 GGTTCAG
1 GGTTTAG
*
89354 GGTTCAG
1 GGTTTAG
*
89361 GG-TTCG
1 GGTTTAG
89367 GG--TAG
1 GGTTTAG
89372 GG-TTAG
1 GGTTTAG
89378 GG-TTAG
1 GGTTTAG
*
89384 GGTGTAG
1 GGTTTAG
*
89391 GGTGTAG
1 GGTTTAG
89398 GG--TAG
1 GGTTTAG
*
89403 GGTGTAG
1 GGTTTAG
*
89410 GGTGTA-
1 GGTTTAG
89416 GGTTGTAG
1 GGTT-TAG
*
89424 GGTGTAG
1 GGTTTAG
89431 GG--TAG
1 GGTTTAG
89436 GGTTTAG
1 GGTTTAG
89443 GGTTTAG
1 GGTTTAG
89450 GGTTTAG
1 GGTTTAG
*
89457 GGTTTCG
1 GGTTTAG
89464 GGTTTAG
1 GGTTTAG
*
89471 GGTTTCG
1 GGTTTAG
89478 GGTTT-G
1 GGTTTAG
89484 GGTTTAG
1 GGTTTAG
89491 GGTTTAG
1 GGTTTAG
89498 GGTTTA-
1 GGTTTAG
89504 GGTTTAG
1 GGTTTAG
89511 GGTTT-G
1 GGTTTAG
89517 GGTTT-G
1 GGTTTAG
89523 GGTTTAG
1 GGTTTAG
89530 GGTTTAG
1 GGTTTAG
89537 GGTTTAG
1 GGTTTAG
89544 GGTTT-G
1 GGTTTAG
89550 GGTTTAG
1 GGTTTAG
89557 GG-TTAG
1 GGTTTAG
89563 GGTTTA-
1 GGTTTAG
89569 GGTTTAG
1 GGTTTAG
89576 GG-TTA-
1 GGTTTAG
89581 GGTTTAG
1 GGTTTAG
89588 GGTTTAG
1 GGTTTAG
89595 GGTTTAG
1 GGTTTAG
89602 GGTTTAG
1 GGTTTAG
89609 GGTTTAG
1 GGTTTAG
89616 GGTTTAG
1 GGTTTAG
89623 GGTTTAG
1 GGTTTAG
89630 GGTTTTAG
1 GG-TTTAG
89638 GGTTTAG
1 GGTTTAG
89645 GGTTTAG
1 GGTTTAG
89652 GGTTTAG
1 GGTTTAG
89659 GGTTTAG
1 GGTTTAG
89666 GG-TT-G
1 GGTTTAG
89671 GGTTTAG
1 GGTTTAG
89678 GG-TTA-
1 GGTTTAG
89683 GGTTTAG
1 GGTTTAG
89690 GGTTTAG
1 GGTTTAG
89697 GGTTTA-
1 GGTTTAG
89703 GGTTTAG
1 GGTTTAG
89710 GGTTTAG
1 GGTTTAG
89717 GGTTTAG
1 GGTTTAG
89724 GGTTTAG
1 GGTTTAG
89731 GGTTTAG
1 GGTTTAG
89738 GGTTTAG
1 GGTTTAG
89745 GGTTTAG
1 GGTTTAG
89752 GGTTTAG
1 GGTTTAG
89759 GGTTTAG
1 GGTTTAG
89766 GGTTTAG
1 GGTTTAG
89773 GG-TTAG
1 GGTTTAG
89779 GGTTTAG
1 GGTTTAG
89786 GGTTTAG
1 GGTTTAG
89793 GGTTTAG
1 GGTTTAG
89800 GGTTTAG
1 GGTTTAG
89807 GGTTTAG
1 GGTTTAG
89814 GGTTTAG
1 GGTTTAG
89821 GGTTTA-
1 GGTTTAG
89827 GGTTTAG
1 GGTTTAG
89834 GGTTTAG
1 GGTTTAG
89841 GGTTTAG
1 GGTTTAG
89848 GGTTTAG
1 GGTTTAG
89855 GGTTTAG
1 GGTTTAG
89862 GGTTTAG
1 GGTTTAG
89869 GGTTTAG
1 GGTTTAG
89876 GGTTTA-
1 GGTTTAG
89882 GGTTTAG
1 GGTTTAG
89889 GGTTTAG
1 GGTTTAG
89896 GGTTTAG
1 GGTTTAG
89903 GGTTTA-
1 GGTTTAG
89909 GG-TTAG
1 GGTTTAG
89915 GGTTTAG
1 GGTTTAG
89922 GGTTTAG
1 GGTTTAG
89929 GGTTTAG
1 GGTTTAG
89936 GGTTTAG
1 GGTTTAG
89943 GGTTTAG
1 GGTTTAG
89950 GGTTT-G
1 GGTTTAG
89956 GG-TTAG
1 GGTTTAG
89962 GGTTTAG
1 GGTTTAG
89969 GGTTTAG
1 GGTTTAG
89976 GGTTTAG
1 GGTTTAG
89983 GGTTTAG
1 GGTTTAG
89990 GGTTTAGG
1 GGTTTA-G
*
89998 GGTTTCG
1 GGTTTAG
90005 GGTTTAG
1 GGTTTAG
90012 GGTTTAG
1 GGTTTAG
90019 GG-TTAG
1 GGTTTAG
90025 GGTTTAG
1 GGTTTAG
90032 GGTTTAG
1 GGTTTAG
90039 GGTTTAG
1 GGTTTAG
90046 GG-TTAG
1 GGTTTAG
90052 GGTTTTAG
1 GG-TTTAG
90060 GGTTTAG
1 GGTTTAG
90067 GGTTTAG
1 GGTTTAG
90074 GG-TTAG
1 GGTTTAG
90080 GGTTTAG
1 GGTTTAG
90087 GGTTTAG
1 GGTTTAG
90094 GGTTT-G
1 GGTTTAG
90100 GGTTTAG
1 GGTTTAG
90107 GGTTTAG
1 GGTTTAG
90114 GG-TTAG
1 GGTTTAG
90120 GG-TTAG
1 GGTTTAG
90126 GGTTTAG
1 GGTTTAG
90133 GG-TTAG
1 GGTTTAG
90139 GGTTTAG
1 GGTTTAG
90146 GGTTTAG
1 GGTTTAG
90153 GGTTTAG
1 GGTTTAG
90160 GGTTTAG
1 GGTTTAG
90167 GGTTTAG
1 GGTTTAG
90174 GGTTT-G
1 GGTTTAG
90180 GGTTTAG
1 GGTTTAG
90187 GGTTTAG
1 GGTTTAG
90194 GG-TTAG
1 GGTTTAG
90200 GG-TTAG
1 GGTTTAG
90206 GGTTTAG
1 GGTTTAG
90213 GGTTTAG
1 GGTTTAG
90220 GG-TT-G
1 GGTTTAG
90225 GGTTTAG
1 GGTTTAG
90232 GG-TTAG
1 GGTTTAG
90238 GGTTTA-
1 GGTTTAG
90244 GGTTTAG
1 GGTTTAG
90251 GG-TTAG
1 GGTTTAG
90257 GGTTTAG
1 GGTTTAG
90264 GGTTTAG
1 GGTTTAG
90271 GGTTTAG
1 GGTTTAG
90278 GGTTTAG
1 GGTTTAG
*
90285 GGGTTAG
1 GGTTTAG
90292 GGTTTAG
1 GGTTTAG
90299 GGTTTAG
1 GGTTTAG
90306 GGTTTA-
1 GGTTTAG
90312 GGTTTAG
1 GGTTTAG
90319 GGTTTAG
1 GGTTTAG
*
90326 GGTTTCG
1 GGTTTAG
90333 GGTTTAG
1 GGTTTAG
90340 GGTTTAG
1 GGTTTAG
90347 GG-TTAG
1 GGTTTAG
90353 GG-TTAG
1 GGTTTAG
90359 GGTTTAG
1 GGTTTAG
90366 GGTTTAG
1 GGTTTAG
90373 GGTTTAG
1 GGTTTAG
90380 GGTTTAG
1 GGTTTAG
90387 GGTTTAG
1 GGTTTAG
90394 GGTTTAG
1 GGTTTAG
90401 GG-TTAG
1 GGTTTAG
**
90407 TTTTTAG
1 GGTTTAG
90414 GGTTTAG
1 GGTTTAG
90421 GGTTTAG
1 GGTTTAG
90428 GGTTTAG
1 GGTTTAG
90435 GGTTTAG
1 GGTTTAG
90442 GGTTTAG
1 GGTTTAG
*
90449 GGTTTTG
1 GGTTTAG
90456 GGTTTAG
1 GGTTTAG
90463 GGTTTAG
1 GGTTTAG
90470 GGTTTAG
1 GGTTTAG
90477 GGTTTAG
1 GGTTTAG
90484 GGTTTAG
1 GGTTTAG
90491 GG-TTAG
1 GGTTTAG
90497 GGTTTAG
1 GGTTTAG
90504 GGTTTA-
1 GGTTTAG
90510 GGTTTAG
1 GGTTTAG
90517 GGTTTTAG
1 GG-TTTAG
90525 GGTTTAG
1 GGTTTAG
90532 GGTTTAG
1 GGTTTAG
90539 GGTTTA-
1 GGTTTAG
90545 GGTTTAG
1 GGTTTAG
*
90552 GGTTTCG
1 GGTTTAG
90559 GGTTTAG
1 GGTTTAG
90566 GGTTTAG
1 GGTTTAG
90573 GGTTTAG
1 GGTTTAG
90580 GGTTTAG
1 GGTTTAG
*
90587 GGTTTCG
1 GGTTTAG
90594 GG-TTAG
1 GGTTTAG
90600 GGTTTAG
1 GGTTTAG
90607 GGTTTAG
1 GGTTTAG
90614 GGTTTAG
1 GGTTTAG
90621 GG-TTAG
1 GGTTTAG
90627 GGTTTAG
1 GGTTTAG
90634 GGTTTAG
1 GGTTTAG
90641 GGTTTAG
1 GGTTTAG
90648 GGTTTAG
1 GGTTTAG
90655 GG--TAG
1 GGTTTAG
90660 GGTTTAG
1 GGTTTAG
90667 GGTTTAG
1 GGTTTAG
90674 GGTTTAG
1 GGTTTAG
90681 GGTTTA-
1 GGTTTAG
90687 GGTTT-G
1 GGTTTAG
90693 GGTTTAG
1 GGTTTAG
90700 GGTTTAG
1 GGTTTAG
90707 GGTTTAG
1 GGTTTAG
90714 GGTTTAG
1 GGTTTAG
90721 GGTTTAG
1 GGTTTAG
90728 GGTTTAG
1 GGTTTAG
90735 GG-TTAG
1 GGTTTAG
90741 GG-TT-G
1 GGTTTAG
90746 GGTTTAG
1 GGTTTAG
90753 GG-TTAG
1 GGTTTAG
90759 GGTTTAG
1 GGTTTAG
90766 GGTTTAG
1 GGTTTAG
90773 GG-TTAGG
1 GGTTTA-G
90780 GGTTTAGG
1 GGTTTA-G
90788 TTGGTTTAG
1 --GGTTTAG
90797 GGTTTAG
1 GGTTTAG
90804 GGTTTTAG
1 GG-TTTAG
90812 GGTTTA-
1 GGTTTAG
90818 GGTTTAG
1 GGTTTAG
90825 GGTTT-G
1 GGTTTAG
90831 GG-TTAG
1 GGTTTAG
90837 GGTTTAG
1 GGTTTAG
90844 GGTTT-G
1 GGTTTAG
90850 GGTTTAG
1 GGTTTAG
*
90857 GGTTTCG
1 GGTTTAG
90864 GG-TTAG
1 GGTTTAG
90870 GG-TTAG
1 GGTTTAG
90876 GG-TTAG
1 GGTTTAG
90882 GG-TTAG
1 GGTTTAG
90888 GG-TTAG
1 GGTTTAG
*
90894 GGTTTCG
1 GGTTTAG
90901 GGTTTAG
1 GGTTTAG
90908 GG-TTAG
1 GGTTTAG
90914 GGTTTAG
1 GGTTTAG
90921 GGTTTA-
1 GGTTTAG
90927 GGTTTAG
1 GGTTTAG
90934 GGTTTAG
1 GGTTTAG
90941 GG-TTAG
1 GGTTTAG
90947 GGTTTAG
1 GGTTTAG
90954 GG-TTAG
1 GGTTTAG
90960 GG-TTAG
1 GGTTTAG
90966 GGTTTAG
1 GGTTTAG
*
90973 GGTTTCG
1 GGTTTAG
90980 GGTTTA-
1 GGTTTAG
90986 GG-TTAG
1 GGTTTAG
90992 GGTTTAG
1 GGTTTAG
90999 GGTTTAG
1 GGTTTAG
91006 GGTTTAG
1 GGTTTAG
91013 GG-TTAG
1 GGTTTAG
91019 GGTTTAG
1 GGTTTAG
91026 GGTTTAG
1 GGTTTAG
91033 GGTTTAG
1 GGTTTAG
91040 GGTTTA-
1 GGTTTAG
91046 GGTTTA-
1 GGTTTAG
91052 GGTTTAG
1 GGTTTAG
91059 GGTTTAG
1 GGTTTAG
91066 GGTTTAG
1 GGTTTAG
91073 GG-TTAG
1 GGTTTAG
91079 GGTTTAGG
1 GGTTTA-G
91087 GGTTTAG
1 GGTTTAG
91094 GGTTTAG
1 GGTTTAG
91101 GGTTTAG
1 GGTTTAG
91108 GGTTTAG
1 GGTTTAG
91115 GGTTTA-
1 GGTTTAG
91121 GGTTTAG
1 GGTTTAG
91128 GGTTTAG
1 GGTTTAG
91135 GGTTTAG
1 GGTTTAG
91142 GGTTTAG
1 GGTTTAG
91149 GGTTTAG
1 GGTTTAG
91156 GGTTTAG
1 GGTTTAG
*
91163 GG-TTCG
1 GGTTTAG
91169 GGTTTAG
1 GGTTTAG
91176 GG-TTAG
1 GGTTTAG
91182 GGTTTAG
1 GGTTTAG
91189 GGTTTAG
1 GGTTTAG
91196 GGTTTAG
1 GGTTTAG
91203 GGTTTTAG
1 GG-TTTAG
91211 GGTTTAG
1 GGTTTAG
91218 GGTTTAG
1 GGTTTAG
91225 GGTTTAG
1 GGTTTAG
91232 GG-TTAG
1 GGTTTAG
91238 GGTTTAGG
1 GGTTTA-G
91246 GGTTTAG
1 GGTTTAG
*
91253 GGTTTCG
1 GGTTTAG
91260 GG-TTAG
1 GGTTTAG
91266 GGTTTAG
1 GGTTTAG
91273 GGTTTAG
1 GGTTTAG
91280 GGTTTAG
1 GGTTTAG
91287 GGTTTAG
1 GGTTTAG
91294 GG-TT-G
1 GGTTTAG
91299 GGTTTAG
1 GGTTTAG
91306 GGTTTAG
1 GGTTTAG
91313 GG-TTAG
1 GGTTTAG
91319 GG-TTAG
1 GGTTTAG
91325 GG-TTAG
1 GGTTTAG
91331 GG-TTAG
1 GGTTTAG
91337 GGTTTAG
1 GGTTTAG
91344 GGTTTAG
1 GGTTTAG
91351 GGTTT-G
1 GGTTTAG
*
91357 GGTTTCG
1 GGTTTAG
91364 GGTTT-G
1 GGTTTAG
91370 GGTTTAG
1 GGTTTAG
91377 GGTTTAG
1 GGTTTAG
91384 GGTTTA-
1 GGTTTAG
91390 GGTTTAG
1 GGTTTAG
91397 GGTTTAG
1 GGTTTAG
91404 GG-TT--
1 GGTTTAG
91408 GGTTTAG
1 GGTTTAG
91415 GGTTTAG
1 GGTTTAG
91422 GG-TTAG
1 GGTTTAG
*
91428 GGTTTCG
1 GGTTTAG
91435 GGTTT-G
1 GGTTTAG
91441 GGTTTAG
1 GGTTTAG
91448 GGTTTA-
1 GGTTTAG
*
91454 GGTTTCG
1 GGTTTAG
91461 GG-TTAG
1 GGTTTAG
91467 GGTTTAG
1 GGTTTAG
91474 GGTTTAG
1 GGTTTAG
*
91481 GGTTTCG
1 GGTTTAG
91488 GG-TT-G
1 GGTTTAG
91493 GGTTTAG
1 GGTTTAG
91500 GGTTTAG
1 GGTTTAG
91507 GGTTTAG
1 GGTTTAG
91514 GG-TTAG
1 GGTTTAG
91520 GGTTTAG
1 GGTTTAG
*
91527 GG-TTGG
1 GGTTTAG
91533 GGTTTAG
1 GGTTTAG
91540 GGTTTAG
1 GGTTTAG
91547 GGTTTAG
1 GGTTTAG
91554 GG-TTAG
1 GGTTTAG
91560 GGTTT-G
1 GGTTTAG
*
91566 GG-TTCG
1 GGTTTAG
91572 GGTTTAG
1 GGTTTAG
*
91579 GGTTTCG
1 GGTTTAG
91586 GGTTT-G
1 GGTTTAG
91592 GGTTTAG
1 GGTTTAG
*
91599 GGTTT-C
1 GGTTTAG
91605 GG-TTAG
1 GGTTTAG
91611 GGTTTAG
1 GGTTTAG
91618 GGTTTAG
1 GGTTTAG
91625 GGTTTAG
1 GGTTTAG
91632 GGTTTAG
1 GGTTTAG
91639 GGTTTAGGG
1 GGTTTA--G
91648 GGTTTAG
1 GGTTTAG
91655 GGTTTAG
1 GGTTTAG
*
91662 GGTTTCG
1 GGTTTAG
91669 GG-TTAG
1 GGTTTAG
91675 GGTTTAG
1 GGTTTAG
*
91682 GGTTTCG
1 GGTTTAG
91689 GGTTTAGG
1 GGTTTA-G
91697 GGTTTAG
1 GGTTTAG
91704 GGTTTAG
1 GGTTTAG
91711 GGTTTAG
1 GGTTTAG
91718 GGTTTAG
1 GGTTTAG
91725 GGTTTAG
1 GGTTTAG
91732 GG-TTAG
1 GGTTTAG
*
91738 GGTTTCG
1 GGTTTAG
91745 GGTTTTTAG
1 GG--TTTAG
*
91754 GGTTT-C
1 GGTTTAG
91760 GGTTTAG
1 GGTTTAG
91767 GGTTTAG
1 GGTTTAG
*
91774 GGTTTTG
1 GGTTTAG
*
91781 GGTGTTCG
1 GGT-TTAG
91789 GGTTT-G
1 GGTTTAG
91795 GGTTTAG
1 GGTTTAG
91802 GGTTTAG
1 GGTTTAG
91809 GGTTTAG
1 GGTTTAG
91816 GGTTTAG
1 GGTTTAG
91823 GGTTTAG
1 GGTTTAG
91830 GGTTTAG
1 GGTTTAG
91837 GGTTTAG
1 GGTTTAG
91844 GGTTTAG
1 GGTTTAG
91851 GGTTTAG
1 GGTTTAG
91858 GGTTTAG
1 GGTTTAG
91865 GGTTTAG
1 GGTTTAG
91872 GGTTTA-
1 GGTTTAG
91878 GGTTTA-
1 GGTTTAG
91884 GGTTTAG
1 GGTTTAG
91891 GGTTTTAG
1 GG-TTTAG
91899 GGTTTAG
1 GGTTTAG
91906 GGTTTAG
1 GGTTTAG
91913 GG-TTAG
1 GGTTTAG
91919 GGTTTAG
1 GGTTTAG
91926 GGTTTAG
1 GGTTTAG
91933 GG-TTAG
1 GGTTTAG
91939 GG-TT--
1 GGTTTAG
91943 GGTTTAG
1 GGTTTAG
91950 GG-TTAG
1 GGTTTAG
91956 GGTTTAG
1 GGTTTAG
91963 GG-TTAG
1 GGTTTAG
*
91969 GGTTTCG
1 GGTTTAG
91976 GGTTTAG
1 GGTTTAG
91983 GGTTTAG
1 GGTTTAG
91990 GGTTTA-
1 GGTTTAG
91996 GGTTTAG
1 GGTTTAG
*
92003 GGTTTCG
1 GGTTTAG
92010 GGTTTAG
1 GGTTTAG
92017 GG-TTAG
1 GGTTTAG
92023 GGTTTAG
1 GGTTTAG
92030 GGTTTAG
1 GGTTTAG
92037 GG-TTAG
1 GGTTTAG
92043 GG-TTAG
1 GGTTTAG
*
92049 GG-TTCG
1 GGTTTAG
92055 GG-TTAG
1 GGTTTAG
92061 GGTTTAG
1 GGTTTAG
92068 GGTTTAG
1 GGTTTAG
92075 GGTTTAG
1 GGTTTAG
*
92082 GGTTTCG
1 GGTTTAG
92089 GG-TTAG
1 GGTTTAG
92095 GG-TTAG
1 GGTTTAG
92101 GG-TTA-
1 GGTTTAG
92106 GGTTTAG
1 GGTTTAG
92113 GGTTTAG
1 GGTTTAG
*
92120 GGTTTCG
1 GGTTTAG
92127 GGTTTCGTAG
1 GG-TT--TAG
92137 GG-TTAG
1 GGTTTAG
92143 GGTTTAG
1 GGTTTAG
92150 GGTTTAG
1 GGTTTAG
92157 GGTTTA-
1 GGTTTAG
92163 GG-TTA-
1 GGTTTAG
*
92168 GG-TTCG
1 GGTTTAG
92174 GGTTTAG
1 GGTTTAG
92181 GGTTTAG
1 GGTTTAG
92188 GGTTTAG
1 GGTTTAG
92195 GGTTTAG
1 GGTTTAG
92202 GGTTT-G
1 GGTTTAG
92208 GGTTTTAG
1 GG-TTTAG
*
92216 GGTTTTTCG
1 GG--TTTAG
92225 GG-TT-G
1 GGTTTAG
92230 GGTTTAG
1 GGTTTAG
92237 GGTTTAG
1 GGTTTAG
92244 GGTTTA-
1 GGTTTAG
92250 GGTTTAG
1 GGTTTAG
92257 GGTTT-G
1 GGTTTAG
92263 GGTTTAGG
1 GGTTTA-G
92271 GGTTTTAG
1 GG-TTTAG
92279 GGTTTAG
1 GGTTTAG
92286 GG-TTAG
1 GGTTTAG
92292 GGTTTAG
1 GGTTTAG
92299 GG
1 GG
Statistics
Matches: 2737, Mismatches: 68, Indels: 298
0.88 0.02 0.10
Matches are distributed among these distances:
4 4 0.00
5 68 0.02
6 657 0.24
7 1879 0.69
8 94 0.03
9 25 0.01
10 10 0.00
ACGTcount: A:0.13, C:0.01, G:0.44, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Done.