genome.fa.s7260.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007260.1 Hibiscus syriacus cultivar Beakdansim tig00019245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67103

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4716--4763	22	2.2	22	85	7	62	54	2	8	35	1.42
4744--5895	2	579.0	2	61	23	120	40	6	3	49	1.44
4736--4768	13	2.5	13	86	13	50	54	0	6	39	1.25
4758--5341	24	25.9	22	66	23	170	37	7	2	52	1.41
4744--4891	9	16.4	9	68	22	80	42	2	2	52	1.27
4833--5307	40	11.3	39	69	21	165	37	8	2	52	1.43
4927--5199	17	18.1	16	67	25	77	35	8	2	53	1.44
4758--5025	89	2.8	92	83	9	260	38	6	1	52	1.38
4758--5194	149	3.0	145	81	11	462	37	7	1	53	1.40
4953--5262	51	6.2	50	72	19	158	35	8	2	53	1.44
4768--5243	149	3.3	144	75	13	426	36	7	2	53	1.41
4760--5429	149	4.6	142	76	13	398	37	7	1	53	1.40
4758--5124	41	8.8	39	66	23	132	38	7	1	52	1.40
5194--5465	143	1.9	143	87	3	399	37	6	2	53	1.38
5641--5895	11	24.2	11	66	16	87	45	4	4	45	1.44
5632--5694	31	2.1	30	85	8	83	44	4	7	42	1.54
5777--5890	60	1.9	57	85	5	156	47	3	6	42	1.45
8050--8160	55	2.0	56	92	1	188	32	32	21	13	1.92
8214--8280	24	2.8	24	77	4	64	55	17	10	16	1.69
10699--10750	18	2.9	17	88	8	77	13	23	44	19	1.86
12889--12947	24	2.3	26	80	17	77	37	18	10	33	1.85
12898--12946	24	2.0	24	96	0	89	38	20	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17235--17298	3	21.0	3	93	3	110	31	0	0	68	0.90
19989--20030	19	2.2	19	86	0	57	30	28	16	23	1.96
20042--20146	41	2.5	42	74	11	101	29	24	13	32	1.93
20134--20192	20	3.0	20	89	0	91	37	22	18	22	1.94
20129--20219	40	2.3	41	79	11	107	39	21	15	23	1.91
20367--20413	22	2.1	22	88	0	67	14	42	21	21	1.88
20786--20824	20	2.0	20	84	0	51	25	12	15	46	1.81
22871--22925	21	2.6	21	91	0	83	21	38	20	20	1.94
24277--24308	13	2.4	13	94	5	55	18	3	15	62	1.45
24493--24556	20	3.2	20	78	8	67	18	18	15	46	1.84
27850--27887	16	2.5	15	84	12	51	65	0	5	28	1.14
28029--28095	20	3.3	20	76	15	75	37	13	22	26	1.91
28029--28186	40	3.9	40	71	10	133	35	12	22	29	1.91
28038--28116	20	4.0	20	81	8	81	37	12	24	25	1.90
28067--28123	20	2.9	19	82	12	71	40	10	24	24	1.87
28067--28134	20	3.4	20	82	11	70	36	11	25	26	1.90
28147--28236	21	4.3	21	87	2	112	28	13	26	31	1.94
28140--28236	41	2.3	42	78	5	108	31	13	24	29	1.93
30015--30053	2	19.5	2	89	10	62	48	0	2	48	1.15
30019--30070	16	3.1	17	84	15	56	46	0	5	48	1.26
30195--30221	2	13.5	2	100	0	54	48	0	0	51	1.00
31861--31912	21	2.5	21	81	3	61	38	19	25	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31901--31990	20	4.4	20	79	8	83	32	25	18	23	1.97
32511--32591	19	4.5	19	73	16	73	46	24	17	11	1.80
32587--32791	20	11.1	19	76	13	160	13	21	21	43	1.86
32587--32791	33	5.6	38	75	11	160	13	21	21	43	1.86
34794--34886	42	2.2	42	84	0	123	21	37	16	24	1.93
34805--34916	21	5.3	21	65	7	57	23	33	19	23	1.97
36274--36309	14	2.6	14	95	0	63	30	0	25	44	1.54
36435--36493	19	3.4	19	68	22	56	15	20	18	45	1.85
38786--38810	12	2.1	12	100	0	50	0	28	0	72	0.86
39922--39979	20	2.9	20	94	0	98	37	22	22	17	1.93
39998--40084	19	4.8	19	89	9	130	14	21	16	47	1.82
39998--40113	33	3.4	33	82	11	151	15	22	18	43	1.87
40201--40237	14	2.6	14	91	0	56	45	21	0	32	1.52
42091--42209	19	6.8	19	68	20	89	44	21	21	12	1.85
42130--42187	14	3.9	14	79	16	71	48	24	17	10	1.78
42114--42204	32	2.8	33	94	3	166	47	21	18	12	1.81
42221--42278	14	3.9	14	75	16	62	8	15	25	50	1.73
42216--42294	32	2.4	33	91	2	133	10	17	24	48	1.78
42269--42317	19	2.5	20	73	3	55	14	22	20	42	1.88
42814--42858	18	2.5	18	88	0	72	13	15	44	26	1.83
44173--44210	20	1.9	20	88	0	58	50	21	15	13	1.78
44473--44516	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44684--44797	20	5.6	20	76	5	77	23	16	23	35	1.95
44787--44879	41	2.3	41	94	0	123	18	23	18	39	1.92
44787--44879	20	4.6	20	73	9	80	18	23	18	39	1.92
44910--44950	21	2.0	21	85	0	55	34	31	17	17	1.93
45330--45358	13	2.2	13	100	0	58	55	0	0	44	0.99
57685--57730	24	1.9	24	90	0	74	10	26	19	43	1.84
58031--58130	33	2.8	36	88	11	154	42	15	15	28	1.86
58028--58164	37	3.8	36	82	12	165	40	14	14	29	1.86
58519--58561	18	2.5	17	85	7	61	25	4	2	67	1.22
62194--62277	17	5.1	16	73	19	59	77	8	14	0	0.99
62217--62267	23	2.2	23	82	6	59	80	7	11	0	0.90
62927--62975	22	2.2	22	88	0	71	34	24	12	28	1.91
63848--64177	36	9.5	35	75	13	207	26	19	14	39	1.90
63858--64177	69	4.6	70	76	10	225	26	19	15	38	1.91
63943--63998	15	3.5	15	75	13	58	25	21	14	39	1.91
63909--64177	69	3.9	69	76	10	300	26	19	14	39	1.90
63926--64237	137	2.3	133	82	7	364	27	19	12	39	1.89
64152--64304	67	2.4	67	82	7	183	32	22	9	35	1.86
64937--65897	209	4.6	210	93	2	1579	34	26	16	22	1.95
64937--65897	104	9.3	105	94	2	1563	34	26	16	22	1.95
64937--65897	313	3.1	314	92	3	1581	34	26	16	22	1.95
65836--65940	43	2.4	43	98	0	201	39	22	18	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65736--66007	143	1.9	141	82	8	345	35	24	18	21	1.95
66549--66648	34	2.8	36	91	8	161	43	15	14	28	1.85
66549--66684	37	3.8	35	84	9	159	41	13	13	30	1.84
67016--67069	16	3.4	16	78	14	51	27	3	3	64	1.27

Tables:   1

The End!