Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007265.1 Hibiscus syriacus cultivar Beakdansim tig00019258_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 150881
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


File 2 of 2

Found at i:149189 original size:20 final size:20

Alignment explanation


    Indices: 149146--149192  Score: 60
    Period size: 20  Copynumber: 2.4  Consensus size: 20

     149136 AAAAAATCTT

                      *        *
     149146 GTTGCGAAAAGGAAACTTGT
          1 GTTGCGAAAAAGAAACTTGC

                                 
     149166 GTTGCGAAAAAGAAA-TTCGC
          1 GTTGCGAAAAAGAAACTT-GC

                   
     149186 GTTGCGA
          1 GTTGCGA

     149193 TTGCAAAAAC


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  19    2  0.08
  20   22  0.92

ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23


Consensus pattern (20 bp):   
GTTGCGAAAAAGAAACTTGC

Done.