genome.fa.s7269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007269.1 Hibiscus syriacus cultivar Beakdansim tig00019272_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110681

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7093--7285	27	7.1	27	93	2	316	40	29	23	7	1.81
9405--9501	50	1.9	50	97	0	185	28	20	12	38	1.89
12416--12490	39	1.9	39	94	0	132	29	24	22	24	1.99
18910--19512	301	2.0	301	99	0	1179	39	22	17	21	1.93
22162--22265	24	4.3	24	96	0	163	21	36	24	18	1.95
32286--32310	10	2.5	10	100	0	50	20	12	60	8	1.57
34813--34846	16	2.1	16	88	0	50	58	14	8	17	1.61
36685--36711	14	1.9	14	100	0	54	25	7	7	59	1.51
39997--40041	21	2.1	22	88	12	67	53	0	0	46	1.00
52040--52092	26	2.0	26	85	0	70	30	1	1	66	1.13
55719--55764	23	2.0	24	95	4	85	50	8	4	36	1.53
56024--56063	18	2.2	18	91	8	64	67	2	0	30	1.04
60426--60520	49	1.9	49	100	0	190	31	12	8	47	1.71
63265--63390	58	2.2	58	86	2	173	33	3	16	46	1.63
63265--63399	29	4.7	29	75	9	123	33	2	16	47	1.62
64413--64466	26	2.1	26	85	0	72	25	7	18	48	1.74
71709--71762	26	2.1	26	85	0	72	25	7	18	48	1.74
73808--73882	21	3.6	21	75	7	64	22	24	17	36	1.95
73872--74044	20	8.6	20	89	5	260	39	24	19	17	1.92
73991--74097	20	5.3	20	82	8	119	32	26	20	20	1.97
73902--74079	60	3.0	60	86	6	202	37	25	19	17	1.93
73902--74062	40	4.0	40	91	6	204	39	24	19	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74939--74992	24	2.2	24	86	0	72	24	18	16	40	1.90
76376--76441	22	3.0	22	81	0	87	22	13	37	25	1.91
76644--76729	20	4.3	20	90	0	136	22	17	18	41	1.90
76719--76771	21	2.5	21	93	0	88	35	16	24	22	1.95
77474--77546	36	2.0	37	86	5	105	47	4	1	46	1.30
80133--80537	208	1.9	208	92	0	684	26	10	19	44	1.82
92505--92544	2	20.0	2	100	0	80	50	0	0	50	1.00
102855--102906	22	2.4	22	86	0	77	38	7	0	53	1.30
104264--104350	36	2.4	36	83	7	113	50	2	0	47	1.13
109104--109143	19	2.0	20	90	4	64	42	0	0	57	0.98

Tables:   1

The End!