Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000727.1 Hibiscus syriacus cultivar Beakdansim tig00001413_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104264

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4992--5049
30
1.9
30
82
6
73
37
15
12
34
1.85
5804--5866
31
2.1
30
87
3
90
46
6
7
39
1.59
5860--5918
29
2.0
28
81
12
66
54
8
3
33
1.48
15406--15469
30
2.1
30
100
0
128
29
20
12
37
1.89
22262--22306
24
1.9
24
86
13
67
37
0
11
51
1.38
23238--23286
24
2.1
24
84
3
64
34
8
6
51
1.57
23936--23961
2
13.0
2
100
0
52
50
0
0
50
1.00
24736--24777
21
2.0
21
90
0
66
23
16
35
23
1.95
24741--24784
21
2.1
21
86
0
61
22
20
31
25
1.98
32244--32302
28
2.1
28
90
0
91
27
16
22
33
1.95
38255--38281
14
1.9
14
100
0
54
14
7
3
74
1.18
38245--38443
52
3.8
51
73
19
142
17
8
2
71
1.21
38322--38368
22
2.1
22
84
7
60
19
6
0
74
1.03
38288--38350
26
2.4
26
76
10
67
15
11
1
71
1.22
38296--38404
55
2.0
53
82
10
132
19
8
1
70
1.21
38419--38464
18
2.3
20
82
14
60
15
2
6
76
1.09
38550--38579
13
2.3
13
94
0
51
30
0
0
70
0.88
39876--39927
23
2.3
23
96
0
95
36
32
3
26
1.75
40379--40586
65
3.2
63
80
12
226
26
18
23
31
1.97
41903--41953
24
2.2
24
86
10
70
52
27
1
17
1.55
41952--41985
13
2.6
13
95
0
59
44
8
14
32
1.76
42706--42735
15
2.0
15
93
0
51
40
30
0
30
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43810--43886
22
3.5
22
78
5
84
23
25
24
25
2.00
43811--43905
44
2.2
42
85
7
120
23
22
26
28
1.99
43810--43905
21
4.5
20
75
11
68
22
22
26
28
1.99
43850--43905
22
2.7
20
81
13
69
23
17
28
30
1.97
51911--51953
16
2.6
16
85
3
50
30
11
2
55
1.48
63823--63873
24
2.2
24
86
10
70
52
27
1
17
1.55
63872--63901
13
2.3
13
94
0
51
43
13
13
30
1.82
64626--64655
15
2.0
15
93
0
51
40
30
0
30
1.57
65730--65806
22
3.5
22
78
5
84
23
25
24
25
2.00
65731--65825
44
2.2
42
85
7
120
23
22
26
28
1.99
65730--65825
21
4.5
20
75
11
68
22
22
26
28
1.99
65770--65825
22
2.7
20
81
13
69
23
17
28
30
1.97
73830--73872
16
2.6
16
85
3
50
30
11
2
55
1.48
75836--75864
14
2.0
15
93
6
51
20
24
27
27
1.99
86095--86153
25
2.4
25
85
5
75
62
0
1
35
1.05
86095--86161
25
2.7
25
81
4
64
61
1
1
35
1.15
90854--90913
31
2.0
31
86
3
86
48
5
16
30
1.67
100351--100511
64
2.5
64
84
4
200
26
19
19
34
1.96
102636--102764
60
2.1
61
88
1
188
20
27
31
21
1.98

Tables:   1

The End!