Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007271.1 Hibiscus syriacus cultivar Beakdansim tig00019277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59770

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--18290
7
2646.6
7
96
3
30019
40
43
2
14
1.58
18301--18463
7
24.7
6
88
8
137
22
57
17
3
1.56
18461--18493
7
4.7
7
100
0
66
12
45
27
15
1.81
19594--19626
7
4.7
7
100
0
66
15
54
30
0
1.41
22236--22268
15
2.2
15
94
0
57
54
0
0
45
0.99
22355--22379
11
2.3
11
100
0
50
64
0
0
36
0.94
27559--27604
22
2.0
23
83
8
58
45
2
2
50
1.26
27563--27612
24
2.0
25
84
3
66
46
2
4
48
1.32
27776--27801
12
2.2
12
100
0
52
34
15
7
42
1.75
31919--31962
12
3.7
12
93
0
70
13
22
18
45
1.84
39786--39831
22
2.1
22
88
8
67
39
2
4
54
1.32
39990--40160
86
2.0
85
87
1
243
43
7
8
40
1.63
40470--40529
23
2.7
23
78
2
68
18
20
11
50
1.77
40897--40997
30
3.4
29
79
5
103
40
8
0
50
1.34
41178--41219
20
2.1
20
86
8
59
30
30
7
30
1.84
41216--41278
30
2.1
30
85
5
83
23
22
15
38
1.93
41243--41318
40
1.9
40
83
0
98
32
19
13
34
1.90
41406--41481
20
3.5
20
74
19
73
31
19
11
36
1.88
41408--41456
25
2.0
25
95
0
89
26
20
14
38
1.91
41465--41540
20
3.8
20
82
0
98
27
26
14
31
1.95
41433--41568
20
6.8
20
77
1
94
27
21
14
36
1.92
41695--41734
20
2.0
20
85
0
53
35
17
7
40
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41844--41895
20
2.6
20
81
6
61
28
23
15
32
1.95
41954--42039
25
3.4
25
81
0
91
25
19
12
41
1.87
41959--42064
20
5.1
20
73
10
70
27
19
12
40
1.87
42048--42118
37
1.9
37
85
0
97
28
11
16
43
1.83
42378--42446
20
3.5
20
76
11
61
28
27
8
34
1.87
42307--42393
35
2.5
35
88
0
138
33
22
12
31
1.92
42498--42536
15
2.6
15
100
0
78
43
23
0
33
1.54
43979--44020
22
1.9
22
100
0
84
30
33
16
19
1.94
46552--46598
21
2.2
21
79
17
53
48
2
2
46
1.25
48213--48264
19
2.7
20
85
5
63
51
15
1
30
1.54
48217--48264
20
2.5
20
86
3
62
56
16
2
25
1.51
52358--52409
24
2.2
24
96
0
95
42
25
15
17
1.88
53026--53101
36
2.1
36
85
7
100
47
1
3
47
1.29
53247--53284
20
1.9
20
88
0
58
21
26
10
42
1.85
55637--55702
17
4.3
17
71
25
74
18
46
22
12
1.81
55638--55695
27
2.1
27
96
0
107
18
50
22
8
1.74
55638--55677
5
7.6
5
83
10
53
20
52
22
5
1.65
55692--55722
7
4.4
7
100
0
62
16
29
29
25
1.96
56597--56720
63
2.0
63
82
6
153
16
26
29
27
1.97

Tables:   1

The End!