Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007272.1 Hibiscus syriacus cultivar Beakdansim tig00019280_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48943

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1559--1649
41
2.2
40
84
7
112
23
13
26
37
1.91
3332--3394
26
2.4
26
77
15
67
46
0
4
49
1.23
3357--3398
17
2.7
15
83
16
59
50
0
4
45
1.23
3366--3456
17
5.4
17
69
21
75
43
1
6
48
1.36
3376--3472
50
1.9
51
95
4
178
41
2
6
50
1.39
3317--3456
67
2.1
67
84
9
189
45
1
5
47
1.35
4293--4353
20
3.0
20
76
9
61
60
11
13
14
1.59
6656--7050
31
12.8
31
91
2
591
48
23
2
24
1.64
7269--7493
6
38.5
6
76
5
201
5
4
44
45
1.46
7270--7493
35
6.4
35
78
7
161
5
4
44
45
1.46
7458--7499
22
1.9
22
85
0
57
11
2
38
47
1.53
7803--8013
114
1.9
114
92
2
361
35
8
27
28
1.86
8444--8688
18
14.1
18
72
13
219
42
5
6
45
1.53
8413--8710
51
5.8
51
82
9
365
42
6
7
44
1.56
8522--8579
17
3.5
17
69
21
50
48
5
5
41
1.48
8507--8668
33
4.7
31
78
17
153
42
4
6
45
1.52
8739--8775
18
2.1
18
89
0
56
43
0
5
51
1.24
8758--8820
24
2.6
24
80
12
67
44
7
7
39
1.63
8846--8888
18
2.4
18
80
0
50
46
9
4
39
1.57
8854--8984
20
7.1
19
65
23
50
41
6
7
44
1.58
8934--8969
14
2.6
14
95
4
65
36
0
8
55
1.30
8943--9002
18
3.6
17
80
8
63
40
5
8
46
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8854--9004
56
2.8
54
76
12
157
41
5
7
44
1.58
9033--9064
7
4.6
7
100
0
64
43
43
0
12
1.42
9059--9113
22
2.5
22
82
11
60
49
9
1
40
1.45
9157--9394
20
12.2
20
72
15
83
44
4
5
45
1.46
9175--9204
11
2.7
11
94
0
51
53
0
0
46
1.00
9272--9403
2
66.5
2
76
12
121
48
3
2
46
1.30
9272--9403
11
11.6
11
79
10
108
48
3
2
46
1.30
9383--9464
42
2.0
40
92
4
137
37
4
1
56
1.29
9522--10011
215
2.3
215
95
0
874
27
12
8
51
1.67
10760--10819
27
2.1
29
87
6
88
36
1
0
61
1.06
10760--10830
29
2.5
26
78
17
70
33
1
1
63
1.12
10982--11041
21
2.9
21
80
2
68
41
1
3
53
1.27
12976--13332
158
2.2
158
84
5
461
49
6
16
27
1.69
19289--19319
16
1.9
16
100
0
62
41
6
19
32
1.77
19341--19384
21
2.1
21
83
8
54
40
0
2
56
1.11
23595--23770
96
1.9
94
82
9
223
44
6
6
42
1.54
30036--30435
198
2.0
198
87
4
574
49
5
19
25
1.70
33192--33225
15
2.3
15
89
0
50
14
2
47
35
1.60
38505--38550
9
4.7
10
78
10
51
32
0
2
65
1.05
38505--38566
27
2.2
27
82
8
70
32
1
3
62
1.20
38502--38549
11
4.6
11
78
21
59
33
0
2
64
1.05
38504--38550
19
2.4
20
80
16
62
31
0
2
65
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40619--40650
17
1.9
16
93
6
55
68
0
0
31
0.90
46220--46244
2
12.5
2
100
0
50
52
0
0
48
1.00
47071--47105
13
2.7
13
86
0
52
11
11
0
77
1.00
48584--48622
20
2.0
20
90
10
62
41
5
10
43
1.61

Tables:   1

The End!