genome.fa.s7275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007275.1 Hibiscus syriacus cultivar Beakdansim tig00019289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72477

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2391--2432	19	2.2	19	100	0	84	35	33	14	16	1.89
7741--7810	35	2.0	35	91	5	115	42	11	15	30	1.82
9136--9329	57	3.5	57	86	4	265	36	20	14	28	1.92
9305--9349	20	2.2	20	88	0	63	31	22	15	31	1.95
9251--9403	71	2.1	73	82	6	184	35	20	13	30	1.91
9382--9450	34	2.0	34	97	0	129	37	23	10	28	1.87
9416--9541	57	2.2	57	89	0	189	37	19	15	27	1.92
9332--9507	91	1.9	90	87	3	255	35	19	13	31	1.90
9561--9669	57	1.9	56	86	1	155	36	22	12	28	1.91
31327--31360	17	2.0	17	94	0	59	47	17	20	14	1.83
39793--39828	18	2.0	18	88	0	54	52	0	16	30	1.44
40955--41063	24	4.5	24	74	4	94	21	14	16	47	1.82
41224--41248	2	12.5	2	100	0	50	48	0	0	52	1.00
47254--47322	23	3.0	23	86	0	93	26	24	27	21	1.99
51282--51433	42	3.6	42	72	10	123	33	16	21	28	1.95
51283--51402	41	2.9	42	79	9	129	34	16	20	28	1.95
52272--52322	24	2.1	24	100	0	102	15	11	35	37	1.84
52516--52673	52	3.1	52	95	0	282	32	6	16	44	1.73
52941--53021	41	1.9	42	85	12	112	35	13	14	35	1.86
56579--56668	39	2.3	40	92	1	155	35	0	26	37	1.57
59362--59420	21	2.8	21	84	0	73	18	5	20	55	1.61
59532--59644	43	2.7	43	82	9	117	25	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59573--59798	43	5.3	43	82	3	231	26	21	22	29	1.99
70086--70126	21	2.0	20	90	4	64	29	7	31	31	1.85

Tables:   1

The End!