Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007276.1 Hibiscus syriacus cultivar Beakdansim tig00019290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59488

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1523--1561
20
2.0
20
84
0
51
15
17
33
33
1.92
19827--19880
28
1.9
28
88
7
83
48
0
0
51
1.00
19834--19887
20
2.6
20
75
16
56
42
0
0
57
0.98
19769--19894
50
2.5
52
72
14
120
48
2
0
49
1.14
19844--19952
28
3.7
29
75
19
75
48
0
2
48
1.15
19897--19960
33
1.9
33
81
6
76
51
0
4
43
1.22
19992--20038
12
4.1
11
76
17
51
51
0
0
48
1.00
19984--20052
23
3.0
23
85
6
77
47
0
1
50
1.09
19977--20102
34
3.7
34
69
25
88
47
0
0
50
1.12
20015--20325
54
5.8
53
66
21
143
48
0
2
48
1.18
20022--20102
19
4.3
19
72
20
64
48
1
1
49
1.17
20056--20127
27
2.7
26
77
12
74
51
1
1
45
1.18
20106--20143
18
2.1
18
90
0
58
55
0
5
39
1.23
20207--20253
22
2.1
23
88
4
69
53
0
2
44
1.12
20215--20258
22
2.0
22
82
8
54
54
0
2
43
1.12
22399--22434
18
1.9
19
88
5
56
16
11
38
33
1.84
24254--24288
18
1.9
18
88
0
52
25
31
25
17
1.97
27412--27469
29
2.0
29
93
0
98
17
5
13
63
1.47
28635--28672
20
1.9
20
94
0
67
13
2
10
73
1.19
30467--30521
20
2.8
20
91
0
92
25
34
16
23
1.95
34178--34271
46
2.0
46
100
0
188
36
19
6
38
1.77
40141--40247
43
2.5
43
84
6
128
35
15
20
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40181--40842
277
2.4
276
84
1
884
37
12
18
31
1.88
41864--42073
65
3.3
63
79
9
219
26
19
24
30
1.98
43007--43044
18
2.1
18
90
0
58
34
15
39
10
1.82
43844--43898
21
2.6
21
97
0
101
30
0
43
25
1.55
44618--44698
23
3.7
23
77
8
96
23
22
25
28
1.99
44623--44717
44
2.2
42
88
7
138
24
20
26
29
1.99
44623--44717
21
4.4
21
76
9
86
24
20
26
29
1.99
50402--50441
21
1.9
21
89
0
62
10
25
40
25
1.86
50423--50473
23
2.3
23
86
6
79
19
21
41
17
1.91
57531--57608
23
3.3
23
78
1
84
35
21
16
25
1.94
57615--57832
103
2.1
103
93
0
373
36
22
13
27
1.91
58571--58611
2
20.5
2
100
0
82
51
0
0
48
1.00
58731--58771
20
2.0
20
100
0
82
34
9
0
56
1.32

Tables:   1

The End!