Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007277.1 Hibiscus syriacus cultivar Beakdansim tig00019299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62996

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1618--1666
22
2.2
23
79
17
59
57
10
0
32
1.32
1606--2263
53
12.6
52
72
17
385
52
12
0
35
1.39
1774--1816
22
2.0
22
95
0
77
51
11
0
37
1.39
1606--2134
159
3.2
164
85
11
642
53
12
0
34
1.39
1930--2027
21
5.1
21
74
22
99
54
11
0
34
1.36
1952--1998
14
3.0
15
72
22
51
55
8
0
36
1.31
1992--2202
75
2.8
77
86
10
278
52
13
0
33
1.41
2043--2111
22
3.2
22
69
17
63
53
18
0
27
1.45
2082--2158
32
2.5
31
95
2
136
53
10
0
36
1.35
2105--2215
14
7.5
14
68
14
62
54
8
0
37
1.30
2087--2141
18
3.3
18
68
19
55
54
12
0
32
1.38
2145--2217
15
4.9
15
72
9
69
53
9
0
36
1.34
2105--2253
45
3.2
45
88
7
201
52
8
0
38
1.33
2187--2316
36
3.8
36
82
13
159
49
5
0
45
1.25
2259--2316
14
4.0
15
84
6
75
48
0
0
51
1.00
2272--2335
29
2.2
28
83
10
76
48
3
0
48
1.17
7778--7904
51
2.5
50
80
3
148
15
34
29
19
1.93
9953--10076
48
2.5
49
79
6
144
29
24
21
24
1.99
13962--13994
2
16.5
2
100
0
66
0
48
0
51
1.00
14032--14294
139
1.9
133
88
6
393
38
10
3
47
1.56
27570--27654
31
2.7
31
87
0
116
51
7
9
31
1.61
28828--29168
176
1.9
176
90
0
538
34
24
12
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30613--30648
18
2.0
18
100
0
72
27
11
5
55
1.57
35302--35360
29
2.0
29
96
0
109
25
11
13
49
1.76
35311--35368
29
2.0
29
86
3
82
31
10
15
43
1.80
35804--35921
57
2.1
57
95
3
211
29
11
13
44
1.79
54651--54763
60
1.9
60
85
3
156
41
6
22
30
1.78
58266--58365
47
2.1
47
100
0
200
56
4
16
24
1.57
58606--58646
15
2.7
15
96
0
73
19
14
26
39
1.90
59545--59569
5
5.0
5
100
0
50
40
0
0
60
0.97
61081--61119
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!