genome.fa.s7278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007278.1 Hibiscus syriacus cultivar Beakdansim tig00019301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131984

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027--1059	16	1.9	18	88	11	52	57	9	3	30	1.45
3461--3510	20	2.5	20	100	0	100	26	16	22	36	1.94
3964--4060	29	3.3	29	95	0	167	32	13	5	48	1.64
7581--7629	22	2.2	23	82	10	57	36	8	0	55	1.30
12135--12167	7	4.9	7	88	7	50	45	0	0	54	0.99
12141--12177	11	3.5	11	82	14	51	43	0	0	56	0.99
12135--12175	13	3.1	13	89	3	55	43	0	0	56	0.99
22736--22783	15	3.2	15	96	0	87	6	16	68	8	1.35
28212--28243	16	2.0	16	93	0	55	34	6	25	34	1.81
52313--52556	127	1.9	127	86	3	348	32	13	20	33	1.92
54262--54407	60	2.4	60	83	6	154	32	21	4	41	1.74
54322--54440	60	2.0	59	86	4	168	31	25	5	37	1.77
56909--56949	21	2.0	21	95	0	73	41	0	14	43	1.45
59301--59346	16	2.6	18	77	12	51	56	2	0	41	1.11
68252--68294	20	2.3	19	88	8	61	23	23	9	44	1.82
69148--69175	10	2.8	10	100	0	56	42	0	7	50	1.30
71715--71803	41	2.0	42	81	10	99	38	7	1	52	1.38
79001--79040	2	20.0	2	100	0	80	50	0	0	50	1.00
85002--85041	21	1.9	21	84	0	53	37	20	30	12	1.89
90341--90428	45	2.0	45	95	0	158	27	13	9	50	1.72
94745--94771	13	2.1	13	100	0	54	37	7	33	22	1.82
96644--96671	3	9.3	3	100	0	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100602--100665	27	2.4	27	94	2	112	25	26	7	40	1.82
110152--110234	29	2.9	29	85	3	105	16	31	27	24	1.97
110361--110418	23	2.5	23	80	0	71	15	37	22	24	1.93
112512--112602	40	2.3	40	92	1	157	37	13	16	32	1.87
114022--114079	22	3.1	18	73	20	55	29	24	22	24	1.99
114022--114092	20	3.5	20	78	14	67	32	22	19	25	1.98
129506--129558	25	2.1	25	85	0	70	39	13	9	37	1.77

Tables:   1

The End!