genome.fa.s7279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007279.1 Hibiscus syriacus cultivar Beakdansim tig00019304_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127154

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823--2045	112	2.0	112	100	0	446	38	16	14	30	1.88
5037--5101	28	2.3	28	94	0	121	35	16	18	29	1.93
11050--11133	43	2.0	43	97	0	159	34	10	3	51	1.54
12532--12571	21	1.9	21	84	0	53	50	0	0	50	1.00
22357--22407	17	2.8	18	79	8	59	47	1	1	49	1.24
28638--28711	31	2.4	31	81	2	85	22	12	12	52	1.71
30297--30408	31	3.6	31	77	7	111	53	9	13	23	1.69
31629--31776	74	2.0	74	98	0	287	20	18	16	45	1.86
44173--44230	28	2.1	28	100	0	116	22	31	13	32	1.93
51649--51715	20	3.3	20	81	8	82	43	25	13	17	1.86
51628--51735	40	2.7	40	84	5	121	40	24	13	21	1.89
51663--51737	20	3.8	20	81	0	87	41	25	12	21	1.87
51847--51901	22	2.5	22	100	0	110	23	43	14	18	1.87
61488--61542	17	3.1	17	72	10	56	36	3	0	60	1.15
64533--64685	32	4.8	32	91	3	231	28	17	20	33	1.95
65572--65604	2	16.5	2	100	0	66	48	0	0	51	1.00
67442--67483	21	2.0	20	82	13	50	35	0	0	64	0.94
75639--75681	20	2.2	20	100	0	86	46	11	0	41	1.40
76443--76583	60	2.3	60	93	1	246	35	11	18	34	1.87
77063--77106	22	1.9	24	86	9	65	29	40	4	25	1.75
81231--81294	21	3.1	21	72	4	67	18	17	26	37	1.93
81369--81406	20	1.9	20	100	0	76	26	26	7	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81879--81922	6	7.5	6	92	2	72	2	13	52	31	1.53
82007--82221	41	5.0	41	77	11	191	35	20	22	21	1.96
82032--82132	20	4.9	21	75	4	98	37	22	18	20	1.94
82243--82295	19	2.8	19	97	0	97	33	16	28	20	1.95
83305--83381	31	2.5	31	89	0	109	28	9	9	53	1.63
87039--87067	3	9.7	3	100	0	58	0	31	0	68	0.89
89241--89287	23	2.0	24	84	12	62	46	6	0	46	1.28
89667--89708	20	2.1	20	82	8	50	40	0	16	42	1.48
92451--92476	2	13.0	2	100	0	52	50	0	0	50	1.00
92531--92596	33	2.0	33	100	0	132	45	0	6	48	1.27
92538--92603	33	2.2	29	82	15	73	40	0	9	50	1.34
92966--93026	26	2.3	27	88	8	90	59	0	0	40	0.98
93146--93191	24	1.9	24	86	8	67	54	0	4	41	1.20
93325--93402	32	2.3	35	77	14	83	53	5	2	38	1.37
97315--97509	101	1.9	102	92	7	333	45	6	4	44	1.47
98897--98925	2	14.5	2	100	0	58	48	0	0	51	1.00
100520--100592	22	3.3	21	81	11	76	23	15	21	39	1.91
114294--114336	22	1.9	23	86	13	63	46	6	13	32	1.71
114905--114967	31	2.0	31	100	0	126	20	25	28	25	1.99
114953--115009	29	2.0	29	96	0	105	14	33	31	21	1.92
115121--115187	14	4.4	14	77	20	71	7	28	38	25	1.83
115230--115288	29	2.0	30	83	3	75	23	27	35	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115558--115587	2	15.0	2	100	0	60	50	0	0	50	1.00
119071--119270	55	3.6	55	81	4	242	30	15	16	38	1.89
120042--120080	20	2.0	20	84	0	51	41	2	0	56	1.13
120105--120168	20	3.0	20	75	16	58	46	0	0	53	1.00
122883--122921	12	3.0	13	85	7	53	46	2	0	51	1.14
127017--127041	12	2.1	12	100	0	50	76	0	0	24	0.80

Tables:   1

The End!