Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000728.1 Hibiscus syriacus cultivar Beakdansim tig00001415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61486

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
811--877
34
1.9
35
93
3
118
41
17
2
37
1.65
8522--8636
51
2.3
51
84
3
142
14
32
28
24
1.95
8857--8885
12
2.3
13
94
5
51
27
3
6
62
1.37
11686--11772
35
2.5
34
83
12
106
56
9
8
26
1.58
12360--12412
18
2.9
18
94
0
88
30
22
24
22
1.99
12362--12422
18
3.4
18
86
4
79
26
21
27
24
1.99
25433--25511
29
2.6
30
86
11
108
53
0
11
35
1.37
25695--25731
13
2.8
13
100
0
74
0
45
0
54
1.00
29757--29825
27
2.6
27
90
2
104
33
14
11
40
1.82
30019--30085
33
2.0
33
85
0
89
46
14
7
31
1.73
45093--45139
18
2.7
18
86
3
60
36
8
25
29
1.86
45717--45795
32
2.5
33
81
6
99
40
37
7
13
1.74
46647--46758
42
2.7
42
91
0
179
16
16
18
47
1.83
46945--47058
31
3.8
31
75
17
89
47
0
0
50
1.13
46953--46996
22
2.0
23
86
4
63
45
0
0
54
0.99
47201--47263
33
2.0
32
87
9
94
52
3
0
44
1.17
47268--47308
20
2.2
19
83
12
50
51
0
2
46
1.14
47509--47550
15
2.8
15
77
0
57
35
19
4
40
1.72
47494--47550
29
1.9
29
89
3
87
35
19
3
42
1.68
49816--50018
95
2.1
95
96
1
370
31
14
13
41
1.84

Tables:   1

The End!