genome.fa.s7280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007280.1 Hibiscus syriacus cultivar Beakdansim tig00019317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105079

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521--559	15	2.6	15	100	0	78	48	0	25	25	1.51
747--822	35	2.2	35	92	0	125	32	2	38	26	1.70
1163--1204	18	2.2	18	87	8	57	50	4	9	35	1.56
3960--4436	180	2.7	176	76	10	431	40	9	11	38	1.74
5478--5508	16	2.0	16	93	6	55	38	9	0	51	1.35
13820--13846	13	2.1	13	100	0	54	40	0	0	59	0.98
14294--14341	4	12.8	4	79	20	59	79	0	0	20	0.74
14292--14369	6	12.2	6	79	17	86	80	0	0	19	0.71
14292--14365	10	7.9	10	81	14	95	81	0	0	18	0.70
14368--14393	6	4.3	6	100	0	52	50	0	0	50	1.00
14315--14404	12	7.9	12	85	4	73	72	0	0	27	0.85
14325--14404	18	4.6	18	78	6	76	71	0	0	28	0.87
15032--15061	14	2.1	15	93	6	53	23	6	6	63	1.43
15267--15296	3	10.3	3	92	7	53	36	0	0	63	0.95
15336--15378	22	2.0	22	95	0	77	48	25	13	11	1.77
22681--22753	38	1.9	38	88	0	110	31	13	24	30	1.94
23669--23720	21	2.5	21	93	0	86	38	25	19	17	1.93
33191--33253	23	2.7	23	80	4	74	22	22	20	34	1.96
41800--41976	37	4.8	37	83	6	198	46	1	6	45	1.35
42058--42120	9	7.0	9	76	18	60	28	0	1	69	0.97
42060--42120	4	14.8	4	78	13	61	27	0	1	70	0.97
42052--42118	24	2.9	24	84	8	77	28	0	1	70	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53223--53339	51	2.4	49	88	5	166	41	12	23	21	1.88
53258--53354	51	1.9	51	82	2	124	45	10	22	21	1.82
54984--55247	36	7.3	35	86	4	303	45	3	9	42	1.52
54984--55254	37	7.4	36	82	8	289	45	3	8	42	1.51
55335--55386	4	13.0	4	78	15	54	28	0	1	69	0.99
55326--55386	19	3.2	19	81	13	63	27	0	3	68	1.05
57456--57513	23	2.4	25	82	8	66	55	1	3	39	1.27
57456--57513	26	2.4	23	85	8	71	55	1	3	39	1.27
57539--57567	13	2.1	14	93	6	51	24	0	0	75	0.80
59389--59427	20	1.9	21	89	5	62	23	7	5	64	1.40
65833--65986	44	3.5	44	93	0	263	31	21	7	39	1.80
66118--66279	40	4.1	40	94	0	279	34	25	15	24	1.95
67224--67299	30	2.5	30	79	8	91	34	23	6	35	1.81
68249--68307	30	2.0	30	86	6	84	33	18	8	38	1.81
70265--70416	6	24.8	6	71	18	109	3	15	3	76	1.06
70266--70392	25	5.2	25	83	13	115	3	17	2	77	1.01
70265--70362	25	3.9	27	87	11	120	3	17	2	77	0.99
70263--70415	29	5.4	29	77	17	105	4	15	3	76	1.08
73111--73262	44	3.5	44	91	3	236	28	22	8	40	1.83
73284--73329	13	3.4	14	82	11	60	56	23	4	15	1.57
73394--73515	40	3.0	40	92	0	190	34	27	14	23	1.94
79484--79636	44	3.5	44	93	0	261	32	21	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79768--79929	40	4.1	40	94	0	279	34	25	15	24	1.95
81903--81961	30	2.0	30	86	6	84	33	18	8	38	1.81
83922--84068	6	23.8	6	71	17	97	4	14	3	77	1.05
83922--84068	19	8.3	17	74	14	113	4	14	3	77	1.05
83921--84020	26	3.8	26	84	9	114	3	16	2	79	0.96
83983--84043	25	2.5	24	84	10	72	3	18	1	77	0.99
83921--84051	26	4.9	26	78	10	106	3	16	3	77	1.01
83921--84068	11	13.5	10	72	19	84	4	14	3	77	1.04
84007--84067	29	2.1	29	84	6	79	4	13	4	77	1.10
86765--86916	44	3.5	44	91	3	236	28	22	8	40	1.83
86938--86983	13	3.4	14	82	11	60	56	23	4	15	1.57
87048--87169	40	3.0	40	92	0	190	34	27	14	23	1.94
88116--88187	30	2.4	30	76	0	81	34	20	5	38	1.76
91165--91285	11	10.4	12	71	14	69	4	14	0	79	0.95
91164--91309	19	8.2	18	75	8	88	5	14	1	78	0.99
91183--91285	13	8.3	13	76	20	80	5	13	0	79	0.96
91165--91303	55	2.4	59	81	10	160	5	15	0	78	0.98
91165--91317	27	5.7	27	69	20	74	5	14	1	79	0.97
91174--91275	21	4.8	21	78	13	93	4	13	0	80	0.93
91180--91309	36	3.5	36	79	13	131	6	13	1	78	1.01
91163--91316	12	12.6	12	70	20	79	5	14	1	78	0.99
91163--91317	13	11.7	12	68	22	71	5	14	1	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93909--94061	44	3.5	44	92	0	252	32	20	7	39	1.80
94193--94313	40	3.0	40	95	0	206	33	26	16	23	1.96
103237--103300	34	1.9	33	87	3	92	25	9	4	60	1.46
103288--103334	2	23.5	2	100	0	94	48	0	0	51	1.00

Tables:   1

The End!