genome.fa.s7283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007283.1 Hibiscus syriacus cultivar Beakdansim tig00019322_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106758

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671--747	32	2.4	32	93	2	136	11	10	36	41	1.76
479--1021	226	2.3	229	83	12	671	24	11	27	35	1.91
3035--3229	105	1.9	103	90	3	311	33	18	17	29	1.94
3728--3772	2	23.0	2	95	4	83	48	0	0	51	1.00
11871--11939	36	1.9	36	84	0	93	14	14	17	53	1.73
19969--20044	14	5.5	14	73	3	55	48	2	6	42	1.43
19969--20005	14	2.7	14	91	4	58	43	0	5	51	1.24
20258--20311	26	2.1	26	85	0	72	31	22	7	38	1.82
21031--21061	13	2.4	13	94	0	53	61	0	0	38	0.96
22917--22943	2	13.5	2	100	0	54	48	0	0	51	1.00
23837--23890	6	9.5	6	84	11	51	51	11	0	37	1.37
23863--23892	2	15.5	2	93	6	53	53	0	0	46	1.00
27098--27207	57	1.9	57	94	0	193	40	6	17	36	1.75
27783--27830	24	2.0	24	92	4	80	31	20	12	35	1.90
38650--38740	43	2.1	43	83	4	112	48	4	0	47	1.22
40418--40466	22	2.2	23	96	3	91	28	10	30	30	1.90
43627--43665	11	3.5	11	89	6	60	38	0	7	53	1.30
43627--43662	12	3.1	12	96	4	65	38	0	8	52	1.32
43823--44048	81	3.0	76	85	10	313	39	8	16	35	1.79
43905--44046	70	2.0	69	94	1	248	39	9	16	34	1.81
45334--45446	35	3.2	34	88	5	163	42	22	0	34	1.60
46489--46601	35	3.2	33	83	6	127	38	0	18	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49712--49754	2	21.5	2	95	0	77	46	0	0	53	1.00
56572--56606	16	2.1	17	94	5	63	34	2	20	42	1.66
61877--61991	30	3.8	30	98	0	212	27	13	13	45	1.81
62472--62526	10	5.2	10	78	10	56	52	0	3	43	1.18
62479--62519	22	2.0	20	90	9	64	51	0	2	46	1.14
62468--62550	32	2.7	32	88	3	125	53	0	2	44	1.13
62500--62587	41	2.1	42	82	2	106	50	1	5	43	1.33
67667--67718	20	2.6	20	96	0	95	38	26	13	21	1.90
67793--67966	20	8.6	20	83	5	217	34	26	19	19	1.96
68348--68418	33	2.2	33	92	0	115	11	22	18	47	1.80
68539--68593	14	3.6	14	73	21	56	40	23	27	9	1.85
68539--68609	33	2.2	33	92	0	115	42	25	23	8	1.82
68605--68702	19	5.7	19	70	22	81	10	24	22	42	1.84
68627--68716	14	5.7	14	74	23	81	8	25	23	42	1.83
68610--68724	33	3.5	33	95	0	212	9	24	20	45	1.81
70420--71153	93	8.1	93	93	5	1326	21	12	19	46	1.83
70420--71153	269	2.7	270	96	2	1364	21	12	19	46	1.83
71197--71325	19	7.3	19	75	17	125	45	28	17	8	1.77
71233--71325	33	2.8	32	91	4	150	46	27	18	7	1.76
71197--71325	52	2.5	52	74	14	140	45	28	17	8	1.77
71321--71441	19	6.6	19	80	10	135	11	19	23	45	1.83
73347--73382	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73489--73590	19	5.6	19	84	13	151	44	17	23	14	1.86
73619--73892	19	15.4	19	81	14	345	14	20	17	47	1.83
73619--73858	71	3.4	71	83	11	355	15	20	17	47	1.83
73587--73920	142	2.4	137	89	7	493	14	20	18	46	1.84
73619--73892	52	5.2	52	90	6	344	14	20	17	47	1.83
76425--76471	24	2.0	24	87	8	69	38	21	14	25	1.92
77145--77513	20	18.5	20	86	4	458	20	18	26	34	1.96
77976--78009	17	1.9	17	88	5	50	35	11	8	44	1.72
85131--85226	35	2.7	35	85	0	129	41	27	1	30	1.63
85384--85673	148	2.0	148	90	1	465	37	5	9	47	1.61
87988--88046	23	2.6	21	76	10	55	15	10	15	59	1.61
92024--92066	20	2.2	20	87	8	61	58	2	4	34	1.32
92333--92459	62	2.0	62	86	0	173	18	14	25	41	1.88
92333--92459	31	4.1	31	83	0	146	18	14	25	41	1.88
102120--102152	14	2.3	14	94	5	57	66	0	0	33	0.92
103137--103166	3	10.0	3	92	0	51	0	3	30	66	1.07

Tables:   1

The End!