Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007284.1 Hibiscus syriacus cultivar Beakdansim tig00019324_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73461

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1929--1977
19
2.6
19
78
15
57
67
4
2
26
1.19
17950--17992
20
2.2
20
95
0
77
37
2
13
46
1.57
27246--27279
12
2.9
12
86
4
52
67
14
0
17
1.23
28325--28384
21
2.9
21
69
11
52
53
1
3
41
1.27
32076--32116
2
20.5
2
100
0
82
48
0
0
51
1.00
32122--32156
14
2.5
14
100
0
70
11
5
40
42
1.65
34306--34356
12
4.3
12
76
18
54
31
0
1
66
1.03
34345--34415
26
2.8
25
83
12
85
46
0
0
53
1.00
34314--34419
12
8.7
12
73
18
85
39
0
0
59
1.04
34361--34446
40
2.2
41
81
10
108
43
1
0
55
1.07
34341--34432
13
7.1
14
71
19
67
40
0
0
59
0.97
34337--34446
40
2.8
40
80
11
106
41
0
0
57
1.05
34420--34478
19
3.1
20
81
18
65
38
1
0
59
1.08
35608--35645
14
2.7
14
91
0
67
31
5
5
57
1.43
36267--36343
30
2.5
30
89
6
111
23
27
11
37
1.89
36932--37040
36
3.1
36
83
1
121
36
1
22
39
1.65
43670--43694
2
12.5
2
100
0
50
48
0
0
52
1.00
53436--53700
132
2.0
132
100
0
530
37
19
14
28
1.91
53581--53778
97
2.0
97
100
0
396
37
21
13
27
1.91
61562--61729
60
2.8
60
81
3
169
41
5
20
32
1.76
66250--66293
12
3.7
12
81
0
52
40
22
9
27
1.84
66247--66288
16
2.6
16
96
0
75
40
21
9
28
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67944--67973
2
15.0
2
92
0
51
53
0
0
46
1.00
69776--69819
2
22.0
2
100
0
88
50
0
0
50
1.00
69944--69988
24
1.9
23
86
4
63
57
6
6
28
1.50
71730--71756
13
2.1
13
100
0
54
44
0
0
55
0.99
72028--72097
31
2.2
32
80
7
90
20
20
10
50
1.76

Tables:   1

The End!