genome.fa.s7288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007288.1 Hibiscus syriacus cultivar Beakdansim tig00019358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66614

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7635--7682	23	2.1	23	84	0	60	37	6	16	39	1.74
8346--8776	182	2.4	182	88	0	646	28	14	12	44	1.82
8647--9223	112	5.1	112	91	1	870	25	12	14	46	1.80
8647--9223	226	2.6	224	91	1	929	25	12	14	46	1.80
12077--12188	57	1.9	58	85	5	156	33	16	14	35	1.89
14112--14144	2	16.5	2	93	0	57	54	0	0	45	0.99
17738--17781	3	14.7	3	100	0	88	34	0	0	65	0.93
26355--26408	20	2.7	21	86	11	78	29	31	24	14	1.95
27655--27737	18	4.2	18	72	21	76	16	46	20	15	1.83
27655--27737	31	2.8	28	79	15	94	16	46	20	15	1.83
27677--27726	13	3.8	13	89	0	64	16	44	22	18	1.87
27729--27760	7	4.4	7	92	7	55	12	34	28	25	1.92
27726--27759	15	2.3	15	100	0	68	14	35	26	23	1.94
32470--32552	18	4.2	18	72	21	76	16	46	20	15	1.83
32470--32552	31	2.8	28	79	15	94	16	46	20	15	1.83
32492--32541	13	3.8	13	89	0	64	16	44	22	18	1.87
32544--32575	7	4.4	7	92	7	55	12	34	28	25	1.92
32541--32574	15	2.3	15	100	0	68	14	35	26	23	1.94
37283--37365	18	4.2	18	72	21	76	16	46	20	15	1.83
37283--37365	31	2.8	28	79	15	94	16	46	20	15	1.83
37305--37354	13	3.8	13	89	0	64	16	44	22	18	1.87
37357--37388	7	4.4	7	92	7	55	12	34	28	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37354--37387	15	2.3	15	100	0	68	14	35	26	23	1.94
43545--43622	7	11.0	7	71	13	61	62	0	0	37	0.95
43517--43632	31	3.5	33	92	7	200	61	0	0	38	0.96
50226--50589	43	8.6	43	75	12	279	28	15	6	50	1.68
50164--50589	128	3.3	126	79	9	409	27	15	5	50	1.67
50216--50703	85	5.8	85	75	11	341	27	15	5	51	1.66
50515--50665	76	2.0	76	83	8	191	28	17	5	49	1.68
50600--50775	42	4.2	41	77	7	151	25	15	5	54	1.61
50600--50705	43	2.5	42	84	4	133	26	15	3	54	1.57
50471--50705	119	2.0	120	83	4	296	27	16	4	51	1.64
56436--56494	30	2.0	30	90	3	93	35	3	10	50	1.53
61098--61482	81	4.8	81	81	14	448	52	12	0	34	1.42
61084--61482	82	4.9	83	77	18	407	52	12	0	35	1.42
61257--61299	21	2.0	22	86	4	61	46	11	2	39	1.53
61201--61694	30	18.3	30	66	30	166	51	13	0	34	1.43
61084--61533	52	8.5	52	70	17	279	52	12	0	35	1.41
61433--61543	32	3.8	32	75	22	125	53	12	0	34	1.39
61466--61508	22	2.0	22	100	0	86	51	13	0	34	1.42
61343--61743	132	3.0	136	80	16	479	52	13	0	34	1.41
61468--61516	22	2.2	22	88	3	71	55	14	0	30	1.40
61642--61756	15	7.5	14	70	17	77	55	6	0	37	1.27
61626--61694	32	2.2	30	94	5	120	55	11	0	33	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61674--61850	15	11.3	15	67	20	96	50	5	0	44	1.25
61642--61764	47	2.6	47	94	1	221	54	8	0	36	1.32
61742--61808	20	3.7	20	64	22	56	44	10	0	44	1.38
61743--61823	34	2.3	35	95	2	146	45	7	0	46	1.31
61797--61851	14	3.9	14	85	7	76	47	0	0	52	1.00
61797--61874	27	2.9	27	86	5	95	47	2	0	50	1.15
64510--64651	43	3.4	44	75	11	154	28	12	28	29	1.93

Tables:   1

The End!