genome.fa.s7289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007289.1 Hibiscus syriacus cultivar Beakdansim tig00019362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118031

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--117	21	5.3	21	65	20	77	29	30	21	19	1.97
4--192	41	4.6	41	92	4	301	32	26	20	21	1.97
4--192	81	2.3	82	92	3	310	32	26	20	21	1.97
4329--4426	39	2.6	38	85	9	130	48	0	17	33	1.47
6166--6190	2	12.5	2	100	0	50	52	0	0	48	1.00
6651--6733	21	4.0	21	75	12	89	22	20	24	32	1.98
6733--6900	42	4.0	42	84	6	218	33	24	19	22	1.97
6736--6901	21	8.0	21	73	11	146	34	24	19	21	1.97
6736--6901	82	2.0	83	87	6	239	34	24	19	21	1.97
6906--6958	21	2.5	21	90	0	79	18	20	30	30	1.97
10591--10657	35	1.9	35	87	0	98	46	1	14	37	1.55
15786--15858	38	2.0	37	83	5	94	49	4	0	46	1.21
21438--21477	18	2.2	18	90	0	62	37	27	15	20	1.92
21163--21623	189	2.4	188	85	2	586	28	19	27	23	1.99
21450--21526	18	4.3	18	72	9	59	36	23	18	22	1.95
32254--32367	60	1.9	60	85	5	160	29	24	2	42	1.68
32494--32616	60	2.0	60	84	3	158	41	3	24	30	1.71
32528--32616	29	2.9	31	69	12	85	41	2	23	32	1.67
34085--34240	83	1.9	84	93	1	269	45	16	16	22	1.85
34641--34666	12	2.2	12	100	0	52	0	15	0	84	0.62
41653--41725	2	36.5	2	100	0	146	50	0	0	49	1.00
44430--44476	3	15.7	3	100	0	94	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46179--46209	15	2.1	15	93	0	53	22	16	12	48	1.80
52701--52747	21	2.2	21	84	0	67	19	27	17	36	1.93
52743--52896	20	7.7	20	86	4	211	38	19	18	23	1.93
52743--52916	60	2.9	59	86	4	231	36	20	18	24	1.95
52743--52916	40	4.3	40	84	6	185	36	20	18	24	1.95
53489--53577	20	4.5	20	85	1	90	15	16	22	44	1.86
53542--53585	20	2.2	20	83	0	52	15	13	18	52	1.75
55467--55550	20	4.5	20	74	17	72	39	21	19	20	1.93
55485--55588	54	1.9	53	88	1	154	38	18	22	21	1.93
55597--55655	20	3.0	20	89	0	91	23	20	18	37	1.94
56216--56257	21	2.2	19	87	12	59	21	35	19	23	1.96
56211--56321	42	2.6	42	77	5	109	21	36	18	22	1.95
57681--57716	14	2.6	14	90	0	54	30	0	22	47	1.52
57818--57911	33	2.8	33	90	3	134	42	20	23	13	1.88
57851--57918	20	3.8	19	74	21	83	45	17	22	14	1.85
57928--58012	33	2.5	33	92	1	134	14	23	18	43	1.87
57995--58088	20	4.7	20	88	2	136	19	21	24	35	1.96
57995--58088	40	2.3	40	92	3	154	19	21	24	35	1.96
61416--61542	40	3.2	40	86	1	155	24	19	18	37	1.94
61416--61542	20	6.3	20	77	3	139	24	19	18	37	1.94
61539--61579	21	2.0	21	90	0	64	39	17	26	17	1.91
61836--61886	21	2.4	21	96	0	93	50	3	5	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62936--63027	9	11.0	8	72	20	55	58	0	0	41	0.98
62934--63017	33	2.5	34	98	1	161	60	0	0	39	0.97
62934--63026	34	2.8	32	87	12	134	60	0	0	39	0.97
76005--76066	29	2.1	30	90	3	99	20	11	40	27	1.87
77726--77765	19	2.0	19	85	9	53	57	5	5	32	1.42
80400--80437	19	2.1	19	85	9	53	15	34	2	47	1.60
80409--80447	19	2.1	19	90	4	62	17	33	0	48	1.48
82244--82277	2	17.0	2	100	0	68	50	0	0	50	1.00
82476--82620	60	2.4	60	81	2	148	34	20	1	44	1.60
85011--85047	19	2.0	19	85	15	51	75	0	13	10	1.04
88303--88346	17	2.6	18	82	10	56	43	0	2	54	1.12
89262--89365	34	3.2	33	74	20	121	55	18	7	18	1.65
89288--89381	28	3.1	28	71	21	91	57	15	9	17	1.64
89262--89381	62	1.9	62	96	0	222	55	17	8	18	1.66
90291--90324	14	2.5	13	86	13	50	82	0	2	14	0.79
92380--92448	23	3.0	23	82	0	84	27	24	26	21	1.99
92874--92907	17	2.0	17	88	0	50	29	11	8	50	1.69
92883--92915	17	2.1	17	88	11	52	27	12	3	57	1.49
93288--93329	18	2.4	18	92	4	68	19	23	21	35	1.96
94341--94367	8	3.4	8	100	0	54	88	0	0	11	0.50
104930--104988	29	2.0	29	96	0	109	23	11	22	42	1.86
108073--108119	21	2.3	21	79	13	55	40	14	8	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117907--117932	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!