genome.fa.s729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000729.1 Hibiscus syriacus cultivar Beakdansim tig00001416_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80539

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471--565	16	5.9	16	65	4	57	41	30	13	14	1.85
467--561	33	3.0	32	80	4	111	41	30	12	15	1.85
5752--5922	59	2.9	59	87	1	227	34	17	13	34	1.89
6265--6311	20	2.3	20	100	0	94	38	23	0	38	1.55
9687--9748	32	1.9	32	87	6	90	3	27	29	40	1.72
11183--11246	29	2.2	28	78	13	67	45	21	3	29	1.67
12137--12210	36	2.0	37	89	2	114	17	10	39	32	1.84
12475--12604	40	3.2	40	64	23	106	46	8	4	40	1.55
12458--12639	84	2.2	84	96	1	339	44	10	4	39	1.61
13161--13224	30	2.2	30	85	2	85	34	14	10	40	1.80
14335--14369	3	11.7	3	100	0	70	65	0	34	0	0.93
22189--22235	18	2.7	18	93	3	78	27	29	8	34	1.87
25982--26037	28	2.0	28	100	0	112	39	10	17	32	1.84
33448--33479	2	16.0	2	100	0	64	50	0	0	50	1.00
33775--33824	17	3.1	17	68	26	54	20	6	22	52	1.68
34701--34725	10	2.5	10	100	0	50	72	0	28	0	0.86
34769--34841	2	37.0	2	82	8	87	56	0	1	42	1.08
35198--35302	37	2.8	37	86	0	147	30	14	15	40	1.87
36033--37196	106	11.0	105	89	3	1644	23	17	24	34	1.96
38015--38113	22	4.5	22	94	0	171	21	13	28	37	1.91
38757--38820	13	5.2	12	78	10	58	0	15	4	79	0.89
38776--38826	24	2.1	25	82	10	61	0	21	3	74	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41923--41971	10	4.9	10	78	7	55	77	2	10	10	1.07
41910--41999	9	9.2	9	71	17	56	76	2	6	14	1.08
41913--41999	30	2.9	29	73	19	79	77	2	6	13	1.08
41997--42058	2	31.5	2	80	9	74	56	0	1	41	1.09
42432--42536	37	2.8	37	86	0	147	31	13	15	40	1.85
43984--44044	30	2.0	30	96	0	113	29	19	3	47	1.65
45849--45893	2	22.5	2	93	0	72	51	2	0	46	1.13
46795--46852	20	2.9	20	89	0	89	41	12	18	27	1.86
48647--48711	15	4.4	14	77	11	76	32	6	21	40	1.78
48647--48711	14	4.4	15	81	14	73	32	6	21	40	1.78
48796--48868	23	3.2	23	76	0	65	20	15	26	38	1.92
48810--48886	23	3.4	23	70	8	59	18	14	24	42	1.87
48878--48929	24	2.2	24	89	0	77	21	21	19	38	1.94
50185--50212	3	9.3	3	100	0	56	64	0	0	35	0.94
55723--55840	32	3.8	32	81	11	154	33	18	17	30	1.95
55703--55868	63	2.7	63	96	0	298	33	18	17	30	1.94
55703--55896	31	6.2	31	77	12	191	31	19	18	30	1.95
68543--68597	23	2.4	23	78	6	58	58	14	14	12	1.64
69847--69887	21	1.9	22	90	5	66	75	0	4	19	0.98
70510--70570	19	3.2	19	75	9	54	54	13	0	32	1.39
70544--70689	74	2.0	75	90	4	233	56	10	2	30	1.46
74245--75153	453	2.0	453	99	0	1782	26	12	24	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76340--76382	22	2.0	21	81	4	50	58	6	2	32	1.38

Tables:   1

The End!