Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007290.1 Hibiscus syriacus cultivar Beakdansim tig00019368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63757
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:8735 original size:26 final size:25
Alignment explanation
Indices: 8706--8761 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 25
8696 AAATACTTTA
8706 ATTTTAAACTAAACTTTTCAA-AAAAT
1 ATTTTAAA-T-AACTTTTCAACAAAAT
*
8732 ATTTTTTAAATCACTTTTCAACAAAAT
1 A--TTTTAAATAACTTTTCAACAAAAT
8759 ATT
1 ATT
8762 AAATTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
25 2 0.08
26 10 0.38
27 7 0.27
28 7 0.27
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (25 bp):
ATTTTAAATAACTTTTCAACAAAAT
Found at i:9111 original size:20 final size:19
Alignment explanation
Indices: 9050--9112 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
9040 AAAAAAACTA
*
9050 AAAAAATATAAATAGAATAT
1 AAAAAATAAAAATAG-ATAT
*
9070 AGAAAATATTAAAATAGA-AT
1 A-AAAA-ATAAAAATAGATAT
9090 AAAAAATAAAAATATGATAT
1 AAAAAATAAAAATA-GATAT
9110 AAA
1 AAA
9113 TACAAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 8 0.22
19 6 0.17
20 9 0.25
21 5 0.14
22 8 0.22
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (19 bp):
AAAAAATAAAAATAGATAT
Found at i:14304 original size:177 final size:177
Alignment explanation
Indices: 14009--14897 Score: 1471
Period size: 177 Copynumber: 5.0 Consensus size: 177
13999 TAATCATCTG
* * * ** *
14009 TATCTGATTTATTGATCAACTAGATTCGGATTA-GATACTAT-GAGGTAATGGTGACTCCCCCAA
1 TATCTGATCTATTAATCAACTAGATTCGGATCATG-TACTATAGAGGTAATGACGACTCTCCCAA
* *
14072 CCAATTAACTCTATTTGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCT
65 CCAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCT
*
14137 TCATCCCACCTGACCAACTAATTGTTGGTTTAGTGATGTAATAATTAA
130 TCATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
* *
14185 TATCTGATCTATTAATCAACTAGATTCGGATCATGTACTATAAAGGTAATGACGACTCACCCAAC
1 TATCTGATCTATTAATCAACTAGATTCGGATCATGTACTATAGAGGTAATGACGACTCTCCCAAC
* *
14250 TAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTATTGCTT
66 CAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCTT
14315 CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
131 CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
* * *
14362 TATATGGTCTATTAATCAACTAGATTCAGATCATGTACTATAGAGGTAATGACGACTCTCCCAAC
1 TATCTGATCTATTAATCAACTAGATTCGGATCATGTACTATAGAGGTAATGACGACTCTCCCAAC
*
14427 CAATTTACTCTATTCGCAATAGTCAGGGTTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCTT
66 CAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCTT
14492 CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
131 CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
* *
14539 TATATGATCTATTAATCAACTAGATTCGGATCATGTACTATAGAGGCAATGACGACTCTCCCAAC
1 TATCTGATCTATTAATCAACTAGATTCGGATCATGTACTATAGAGGTAATGACGACTCTCCCAAC
* *
14604 CAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGAGTTTGTTTAAGGGATCTACTGCTT
66 CAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCTT
14669 CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
131 CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
* *
14716 TA-CATGATCTATTAATCAACTAGATTCGGATCAGGTAGTATAGAGGTAATGACGACTCTCCCAA
1 TATC-TGATCTATTAATCAACTAGATTCGGATCATGTACTATAGAGGTAATGACGACTCTCCCAA
* * *
14780 CCAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACCTTATTTAAGGGATGTAGTG-T
65 CCAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCT
* *
14844 CTCATCCTATCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
130 -TCATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
14893 TATCT
1 TATCT
14898 CATCAAAGGG
Statistics
Matches: 671, Mismatches: 37, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
176 37 0.06
177 633 0.94
178 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (177 bp):
TATCTGATCTATTAATCAACTAGATTCGGATCATGTACTATAGAGGTAATGACGACTCTCCCAAC
CAATTTACTCTATTCGCAATAGTCAGGATTTGAACCATTGACTTTGTTTAAGGGATCTAGTGCTT
CATCCCACCTGACCAACTGATTGTTGGTTTAGTGATGTAATAATTAA
Found at i:15264 original size:5 final size:5
Alignment explanation
Indices: 15254--15307 Score: 74
Period size: 5 Copynumber: 11.0 Consensus size: 5
15244 TTCATTGGGC
* * *
15254 TTTTA TTTTA TTTAA TTTAA TTTAA TTTT- TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
15303 TTTTA
1 TTTTA
15308 ACATTACCCC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
4 4 0.09
5 42 0.91
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:15405 original size:2 final size:2
Alignment explanation
Indices: 15398--15422 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15388 AAATCTACAC
15398 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15423 GCACTAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18919 original size:21 final size:21
Alignment explanation
Indices: 18880--18919 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18870 AAAAAAATCC
*
18880 AACCCGGTCGGGTCGGGTCGG
1 AACCCGGTCGGGTCAGGTCGG
18901 AACCC-GTCGGGTTCAGGTC
1 AACCCGGTCGGG-TCAGGTC
18920 CCTTTTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.30, G:0.40, T:0.17
Consensus pattern (21 bp):
AACCCGGTCGGGTCAGGTCGG
Found at i:25570 original size:22 final size:22
Alignment explanation
Indices: 25522--25574 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
25512 CCAAAATAAT
*
25522 AAAAAAT-ATTATTTCTATTCA
1 AAAAAATAATTATTTCAATTCA
*
25543 ATAAAAATAATTATTT-AATTGA
1 A-AAAAATAATTATTTCAATTCA
25565 AAAAAATAAT
1 AAAAAATAAT
25575 ATATAAAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 10 0.36
22 11 0.39
23 7 0.25
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
AAAAAATAATTATTTCAATTCA
Found at i:25869 original size:57 final size:57
Alignment explanation
Indices: 25781--25953 Score: 294
Period size: 57 Copynumber: 3.0 Consensus size: 57
25771 AGAAGCTTGA
*
25781 TGAATAAGGTAAATGGACTTAGGGACTGTTTGTTTGTCTCTTAATGAAACCATTCAG
1 TGAATAAGGTAAATGGACTTAGGGGCTGTTTGTTTGTCTCTTAATGAAACCATTCAG
* * *
25838 TGAATAAGGTAAATGGACTTAGGGGTTGTTTGTTTGTCTCTTAATGGAATCATTCAG
1 TGAATAAGGTAAATGGACTTAGGGGCTGTTTGTTTGTCTCTTAATGAAACCATTCAG
25895 TGAATAAGGTAAATGGACTTAGGGGCTGTTTGTTTGTCTCTTAAT-AGAACCATTCAG
1 TGAATAAGGTAAATGGACTTAGGGGCTGTTTGTTTGTCTCTTAATGA-AACCATTCAG
25952 TG
1 TG
25954 TTGAATGTTG
Statistics
Matches: 108, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 108 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (57 bp):
TGAATAAGGTAAATGGACTTAGGGGCTGTTTGTTTGTCTCTTAATGAAACCATTCAG
Found at i:26166 original size:15 final size:16
Alignment explanation
Indices: 26130--26168 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
26120 AGAACCTCTG
*
26130 AATCATTCAACATTTA
1 AATCATTCAACACTTA
*
26146 AATCATTCAACGCTT-
1 AATCATTCAACACTTA
26161 AATCATTC
1 AATCATTC
26169 TGAAGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.36
Consensus pattern (16 bp):
AATCATTCAACACTTA
Found at i:36698 original size:2 final size:2
Alignment explanation
Indices: 36656--36680 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36646 GCAAGTCCAT
36656 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
36681 CATTGATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36816 original size:7 final size:8
Alignment explanation
Indices: 36799--36833 Score: 56
Period size: 7 Copynumber: 4.6 Consensus size: 8
36789 TAAAAGTGTA
36799 TATATAAG
1 TATATAAG
36807 TATA-AAG
1 TATATAAG
36814 TATATAA-
1 TATATAAG
36821 TATATAAG
1 TATATAAG
36829 TATAT
1 TATAT
36834 GTATATATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 14 0.56
8 11 0.44
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (8 bp):
TATATAAG
Found at i:36826 original size:22 final size:21
Alignment explanation
Indices: 36798--36840 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
36788 ATAAAAGTGT
36798 ATATATAAGTATAAAGTATATA
1 ATATATAAGTAT-AAGTATATA
*
36820 ATATATAAGTATATGTATATA
1 ATATATAAGTATAAGTATATA
36841 TTGAAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
ATATATAAGTATAAGTATATA
Found at i:36841 original size:16 final size:15
Alignment explanation
Indices: 36799--36833 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
36789 TAAAAGTGTA
36799 TATATAAGTATA-AAG
1 TATATAA-TATATAAG
36814 TATATAATATATAAG
1 TATATAATATATAAG
36829 TATAT
1 TATAT
36834 GTATATATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (15 bp):
TATATAATATATAAG
Found at i:36849 original size:22 final size:22
Alignment explanation
Indices: 36802--36849 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
36792 AAGTGTATAT
*
36802 ATAAGTATAAAGTATATAATAT
1 ATAAGTATAAAGTATATAATAA
* *
36824 ATAAGTAT-ATGTATATATTGAA
1 ATAAGTATAAAGTATATAAT-AA
36846 ATAA
1 ATAA
36850 ATACAAGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (22 bp):
ATAAGTATAAAGTATATAATAA
Found at i:37161 original size:29 final size:29
Alignment explanation
Indices: 37119--37181 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
37109 AAACTATATA
37119 ATATAAATATATAAACTATATATATATAGT
1 ATATAAATATATAAACTATATATATA-AGT
* *
37149 ATATAAA-CTATAAATTATATATATAAGT
1 ATATAAATATATAAACTATATATATAAGT
37177 ATATA
1 ATATA
37182 CATAAGTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 8 0.26
29 16 0.52
30 7 0.23
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (29 bp):
ATATAAATATATAAACTATATATATAAGT
Found at i:37194 original size:22 final size:21
Alignment explanation
Indices: 37092--37193 Score: 111
Period size: 22 Copynumber: 4.9 Consensus size: 21
37082 CGCGCACACA
*
37092 TATATATAAAAGTATATAAAC
1 TATATATATAAGTATATAAAC
*
37113 TATATAATATAAATATATAAAC
1 TATAT-ATATAAGTATATAAAC
37135 TATATATATATAGTATATAAAC
1 TATATATATA-AGTATATAAAC
* *
37157 TATA-A-ATTA-TATATATAAG
1 TATATATATAAGTATATA-AAC
*
37176 TATATACATAAGTATATA
1 TATATATATAAGTATATA
37194 TGTGATGTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
18 6 0.09
19 7 0.10
20 3 0.04
21 14 0.20
22 39 0.57
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (21 bp):
TATATATATAAGTATATAAAC
Found at i:37263 original size:12 final size:12
Alignment explanation
Indices: 37164--37268 Score: 61
Period size: 12 Copynumber: 8.5 Consensus size: 12
37154 AACTATAAAT
*
37164 TATATATATAAG
1 TATATACATAAG
37176 TATATACATAAG
1 TATATACATAAG
** *
37188 TATATATGTGATG
1 TATATACAT-AAG
* * *
37201 TATGTACACAAATA
1 TATATACA-TAA-G
*
37215 TATATATATAAG
1 TATATACATAAG
*
37227 CATATATACATAAA
1 --TATATACATAAG
37241 TATATAC--AAG
1 TATATACATAAG
37251 TATATACATAAG
1 TATATACATAAG
*
37263 TTTATA
1 TATATA
37269 TATATATAAG
Statistics
Matches: 68, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
10 9 0.13
12 33 0.49
13 10 0.15
14 16 0.24
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.37
Consensus pattern (12 bp):
TATATACATAAG
Found at i:37282 original size:14 final size:14
Alignment explanation
Indices: 37091--37283 Score: 83
Period size: 14 Copynumber: 14.3 Consensus size: 14
37081 ACGCGCACAC
*
37091 ATATATATAAAAGT
1 ATATATATATAAGT
37105 ATATAAACTATATAA-T
1 ATAT--A-TATATAAGT
* *
37121 ATAAATATATAAACT
1 ATATATATAT-AAGT
37136 ATATATATAT-AGT
1 ATATATATATAAGT
* *
37149 ATATAAACTATAAAT
1 ATATATA-TATAAGT
37164 -TATATATATAAG-
1 ATATATATATAAGT
*
37176 -TATATACATAAGT
1 ATATATATATAAGT
*
37189 ATATATGTGAT--GT
1 ATATATAT-ATAAGT
* * *
37202 ATGTACACA-AA-T
1 ATATATATATAAGT
*
37214 ATATATATATAAGC
1 ATATATATATAAGT
*
37228 ATATATACAT-A--
1 ATATATATATAAGT
*
37239 A-ATATATACAAG-
1 ATATATATATAAGT
*
37251 -TATATACATAAGTTT
1 ATATATATATAAG--T
37266 ATATATATATAAGT
1 ATATATATATAAGT
37280 ATAT
1 ATAT
37284 CATTAAACAT
Statistics
Matches: 133, Mismatches: 25, Indels: 42
0.67 0.12 0.21
Matches are distributed among these distances:
10 6 0.05
11 2 0.02
12 28 0.21
13 27 0.20
14 34 0.26
15 14 0.11
16 16 0.12
17 6 0.05
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (14 bp):
ATATATATATAAGT
Found at i:37730 original size:23 final size:24
Alignment explanation
Indices: 37685--37734 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 24
37675 ATCTTTTATA
37685 TATATTTTAAAATTTTAAGTTAAAT
1 TATATTTTAAAATTTTAAGTT-AAT
37710 TATA-TTT-AAATTATTAA-TTAAT
1 TATATTTTAAAATT-TTAAGTTAAT
37732 TAT
1 TAT
37735 TACATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.25
23 7 0.29
24 7 0.29
25 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TATATTTTAAAATTTTAAGTTAAT
Found at i:39062 original size:21 final size:21
Alignment explanation
Indices: 39036--39092 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
39026 TTTTACACTT
39036 AGGGAACCGATTCCCTATGAG
1 AGGGAACCGATTCCCTATGAG
39057 AGGGAACCGATTCCCTATGAG
1 AGGGAACCGATTCCCTATGAG
*
39078 AGGGTACCGATTCCC
1 AGGGAACCGATTCCC
39093 CCACGCTCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.19
Consensus pattern (21 bp):
AGGGAACCGATTCCCTATGAG
Found at i:39309 original size:13 final size:13
Alignment explanation
Indices: 39288--39342 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
39278 AAGTTCGATA
*
39288 AATTCAAATACTT
1 AATTGAAATACTT
39301 AATTGAAATACTT
1 AATTGAAATACTT
* *
39314 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
39328 AATTGAAATACTT
1 AATTGAAATACTT
39341 AA
1 AA
39343 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:39424 original size:32 final size:33
Alignment explanation
Indices: 39328--39426 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
39318 AACTCAACAT
* * *
39328 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
39361 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
39394 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
39426 A
1 A
39427 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:39445 original size:21 final size:21
Alignment explanation
Indices: 39421--39462 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
39411 ACTTCAAGTT
39421 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
39442 CGATAATTGAAATAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
39463 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:41912 original size:28 final size:26
Alignment explanation
Indices: 41872--41929 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
41862 AAAAAACCAG
* *
41872 TTTTTCCCAAATCTGAT-TTCGGATATT
1 TTTTTCCAAAATCGGATATTC-GA-ATT
41899 TTTTTCGCAAAATCGGATATTCGAATT
1 TTTTTC-CAAAATCGGATATTCGAATT
41926 TTTT
1 TTTT
41930 GTGCACCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 13 0.48
28 11 0.41
29 3 0.11
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (26 bp):
TTTTTCCAAAATCGGATATTCGAATT
Found at i:47414 original size:29 final size:29
Alignment explanation
Indices: 47381--47494 Score: 183
Period size: 29 Copynumber: 3.9 Consensus size: 29
47371 TCCCCAAGAA
* *
47381 TAGGTCGCCATGCCCTCCGGGTGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
* *
47410 TAGGTCGCCATGCAATCCTGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
*
47439 TAGGTCGCCATGCACTCCTGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
47468 TAGGTCGCCATGCACTCCGGGCGACCT
1 TAGGTCGCCATGCACTCCGGGCGACCT
47495 ACCCTTCCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 79 1.00
ACGTcount: A:0.14, C:0.34, G:0.29, T:0.23
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCGGGCGACCTTG
Found at i:47582 original size:14 final size:14
Alignment explanation
Indices: 47563--47594 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
47553 CTCACATAAT
47563 TCGGTCGGATGGCC
1 TCGGTCGGATGGCC
47577 TCGGTCGGATGGCC
1 TCGGTCGGATGGCC
47591 TCGG
1 TCGG
47595 ATGCTCTCGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.28, G:0.44, T:0.22
Consensus pattern (14 bp):
TCGGTCGGATGGCC
Found at i:47594 original size:10 final size:11
Alignment explanation
Indices: 47567--47629 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 11
47557 CATAATTCGG
47567 TCGGATGGCCTC
1 TCGGATGG-CTC
47579 GGTCGGATGGC-C
1 --TCGGATGGCTC
47591 TCGGAT-GCTC
1 TCGGATGGCTC
* *
47601 TCGCATAGCTTC
1 TCGGATGGC-TC
47613 TCGGATGGC-C
1 TCGGATGGCTC
47623 TCGGATG
1 TCGGATG
47630 CCCACCGTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
9 2 0.05
10 20 0.47
11 2 0.05
12 10 0.23
13 1 0.02
14 8 0.19
ACGTcount: A:0.11, C:0.29, G:0.35, T:0.25
Consensus pattern (11 bp):
TCGGATGGCTC
Found at i:47779 original size:29 final size:29
Alignment explanation
Indices: 47725--47781 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
47715 TCCCCAACAC
* ***
47725 ATAGGTCGTCATGCCCTCCGGGCGACCTT
1 ATAGGTCGCCATGCCCTCCCAACGACCTT
47754 ATAGGTCGCCATGCCCTCCCAACGACCT
1 ATAGGTCGCCATGCCCTCCCAACGACCT
47782 ACGACAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.18, C:0.39, G:0.23, T:0.21
Consensus pattern (29 bp):
ATAGGTCGCCATGCCCTCCCAACGACCTT
Found at i:49850 original size:41 final size:41
Alignment explanation
Indices: 49803--49885 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
49793 GAATCAGCTA
49803 CCAACTATCAGTTATTTGCCAAATACTCCCTAAATAAATAG
1 CCAACTATCAGTTATTTGCCAAATACTCCCTAAATAAATAG
49844 CCAACTATCAGTTATTTGCCAAATACTCCCTAAATAAATAG
1 CCAACTATCAGTTATTTGCCAAATACTCCCTAAATAAATAG
49885 C
1 C
49886 AAGTACAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (41 bp):
CCAACTATCAGTTATTTGCCAAATACTCCCTAAATAAATAG
Found at i:51767 original size:162 final size:162
Alignment explanation
Indices: 51487--51848 Score: 539
Period size: 162 Copynumber: 2.2 Consensus size: 162
51477 ACTATTTGTT
* * ** *
51487 GATTTTTTCCCATCCTTCACCGAATTCTTGCCTTCATTCGAGTTTGATTGCTGGTTCAAATCGAT
1 GATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTCGAGCCTGATTGCTGGTGCAAATCGAT
* * * * * *
51552 TTTACTTGCACCATTATCAGTACCCCCTTTTGATCCATCGATTCGATCTCCTCCATGGTCTTTCC
66 CTTACTAGCACCATTATCAGCACCCCCTTTTGATCCATCAATTCGAACTCCTCCATGATCTTTCC
*
51617 CACTAATTG-TATTTCTTTTTGCTTCACCACTC
131 CACTAATTGAT-TTTCCTTTTGCTTCACCACTC
*
51649 GATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTCGAGCCTGATTGCTGGTGCAAATCGCT
1 GATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTCGAGCCTGATTGCTGGTGCAAATCGAT
* *
51714 CTTACTAGCATCATTATCAGCACCCCCTTTTGATCCATCAATTTGAACTCCTCCATGATCTTTCC
66 CTTACTAGCACCATTATCAGCACCCCCTTTTGATCCATCAATTCGAACTCCTCCATGATCTTTCC
*
51779 CACTATTTGATTTTCCTTTTGCTTCACCACTC
131 CACTAATTGATTTTCCTTTTGCTTCACCACTC
*
51811 -AGTTCTTTCCCATCCTTTACCAAATTCTTGCCTTCATT
1 GA-TTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATT
51849 AGAACCCGAT
Statistics
Matches: 181, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
161 1 0.01
162 179 0.99
163 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.10, T:0.40
Consensus pattern (162 bp):
GATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTCGAGCCTGATTGCTGGTGCAAATCGAT
CTTACTAGCACCATTATCAGCACCCCCTTTTGATCCATCAATTCGAACTCCTCCATGATCTTTCC
CACTAATTGATTTTCCTTTTGCTTCACCACTC
Found at i:52080 original size:162 final size:161
Alignment explanation
Indices: 51898--52214 Score: 415
Period size: 162 Copynumber: 2.0 Consensus size: 161
51888 TTTTGATCTC
* * *
51898 ATTTGTATTTCCGTTTGCTTCACCACTC-AGTTCTTTCCCATCCTTTACCGAATTC-TTGCCTTC
1 ATTTGTATTTCCGTTTGCTTCACCACTCGA-TTCTTTCCCATCCTTCACC-AAGTCGTTGCCTCC
* * * **
51961 ATTTGAACCCGATTGCCGGTTCAAACCACTCTTACTGGCATCACTAACAGCA-CCCTGTTTTGAT
64 ATTCGAACCCGATCGCC-GTTCAAACCACTCTTACTGGCATCACTAACAGCACCCCT-CTCCGAT
*
52025 CCATCAATTTGATCTCTTCCGTTATCTTTCCCACT
127 CCATCAATTTGATCTCTTCCATTATCTTTCCCACT
*
52060 ATTTGTATTTCCTTTTGCTTCACCACTCGATTCTTTCCCATCCTTCACCAAGTCGTTGCCTCCAT
1 ATTTGTATTTCCGTTTGCTTCACCACTCGATTCTTTCCCATCCTTCACCAAGTCGTTGCCTCCAT
* *** * * *
52125 TCGAACCCGATCGCCGTTCATATTGCTCTTACTTGCATCATTATCAGCACCCCTCTCCGATCCAT
66 TCGAACCCGATCGCCGTTCAAACCACTCTTACTGGCATCACTAACAGCACCCCTCTCCGATCCAT
*
52190 CAGTTTGATCTCTTCCATTATCTTT
131 CAATTTGATCTCTTCCATTATCTTT
52215 AATAGAATCG
Statistics
Matches: 134, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
161 62 0.46
162 71 0.53
163 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.11, T:0.38
Consensus pattern (161 bp):
ATTTGTATTTCCGTTTGCTTCACCACTCGATTCTTTCCCATCCTTCACCAAGTCGTTGCCTCCAT
TCGAACCCGATCGCCGTTCAAACCACTCTTACTGGCATCACTAACAGCACCCCTCTCCGATCCAT
CAATTTGATCTCTTCCATTATCTTTCCCACT
Found at i:52133 original size:277 final size:277
Alignment explanation
Indices: 51623--52140 Score: 747
Period size: 277 Copynumber: 1.9 Consensus size: 277
51613 TTCCCACTAA
**
51623 TTGTATTTCTTTTTGCTTCACCACTCGATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTC
1 TTGTATTTCCGTTTGCTTCACCACTCGATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTC
* * * * * * *
51688 GAGCCTGATTGCTGGTGCAAATCGCTCTTACTAGCATCATTATCAGCACCCCCTTTTGATCCATC
66 GAACCCGATTGCCGGTGCAAACCACTCTTACTAGCATCACTAACAGCACCCCCTTTTGATCCATC
51753 AATTTGAACTCCTCCATGATCTTTCCCACTATTTGATTTTCCTTTTGCTTCACCACTCAGTTCTT
131 AATTTGAACTCCTCCATGATCTTTCCCACTATTTGATTTTCCTTTTGCTTCACCACTCAGTTCTT
* * * *
51818 TCCCATCCTTTACCAAATTCTTGCCTTCATTAGAACCCGATTGCCGGTTCGAATCAATATCAGCA
196 TCCCATCCTTCACCAAAGTCTTGCCTCCATTAGAACCCGATCGCCGGTTCGAATCAATATCAGCA
51883 CCCCCTTTTGATCTCAT
261 CCCCCTTTTGATCTCAT
* *
51900 TTGTATTTCCGTTTGCTTCACCACTC-AGTTCTTTCCCATCCTTTACCGAATTCTTGCCTTCATT
1 TTGTATTTCCGTTTGCTTCACCACTCGA-TTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATT
* * * **
51964 TGAACCCGATTGCCGGTTCAAACCACTCTTACTGGCATCACTAACAGCACCCTGTTTTGATCCAT
65 CGAACCCGATTGCCGGTGCAAACCACTCTTACTAGCATCACTAACAGCACCCCCTTTTGATCCAT
* * * *
52029 CAATTTGATCTCTTCCGTTATCTTTCCCACTATTTG-TATTTCCTTTTGCTTCACCACTC-GATT
130 CAATTTGAACTCCTCCATGATCTTTCCCACTATTTGAT-TTTCCTTTTGCTTCACCACTCAG-TT
*
52092 CTTTCCCATCCTTCACC-AAGTCGTTGCCTCCATTCGAACCCGATCGCCG
193 CTTTCCCATCCTTCACCAAAGTC-TTGCCTCCATTAGAACCCGATCGCCG
52141 TTCATATTGC
Statistics
Matches: 212, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
276 7 0.03
277 205 0.97
ACGTcount: A:0.19, C:0.32, G:0.11, T:0.38
Consensus pattern (277 bp):
TTGTATTTCCGTTTGCTTCACCACTCGATTCTTTCCCATCCTTCACCAAATTCTTGCCTTCATTC
GAACCCGATTGCCGGTGCAAACCACTCTTACTAGCATCACTAACAGCACCCCCTTTTGATCCATC
AATTTGAACTCCTCCATGATCTTTCCCACTATTTGATTTTCCTTTTGCTTCACCACTCAGTTCTT
TCCCATCCTTCACCAAAGTCTTGCCTCCATTAGAACCCGATCGCCGGTTCGAATCAATATCAGCA
CCCCCTTTTGATCTCAT
Found at i:54953 original size:20 final size:20
Alignment explanation
Indices: 54914--54953 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
54904 AAATAGTTAA
* *
54914 TTATTATTATTTAATTTTTC
1 TTATTATTATTAAATATTTC
*
54934 TTATTTTTATTAAATATTTC
1 TTATTATTATTAAATATTTC
54954 AAATTTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTATTATTAAATATTTC
Found at i:55304 original size:88 final size:88
Alignment explanation
Indices: 55155--55330 Score: 334
Period size: 88 Copynumber: 2.0 Consensus size: 88
55145 GTGGAGAACA
*
55155 GAGACATACACGTTCCATCTTCCGTGTAGGGAGTACGCCATTATTCTGGAAGATGTTTCAATGCA
1 GAGACACACACGTTCCATCTTCCGTGTAGGGAGTACGCCATTATTCTGGAAGATGTTTCAATGCA
*
55220 ACTAGAACTCCCGGTAGATGGAC
66 ACTAGAACTCCAGGTAGATGGAC
55243 GAGACACACACGTTCCATCTTCCGTGTAGGGAGTACGCCATTATTCTGGAAGATGTTTCAATGCA
1 GAGACACACACGTTCCATCTTCCGTGTAGGGAGTACGCCATTATTCTGGAAGATGTTTCAATGCA
55308 ACTAGAACTCCAGGTAGATGGAC
66 ACTAGAACTCCAGGTAGATGGAC
55331 ATGTTATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (88 bp):
GAGACACACACGTTCCATCTTCCGTGTAGGGAGTACGCCATTATTCTGGAAGATGTTTCAATGCA
ACTAGAACTCCAGGTAGATGGAC
Found at i:62007 original size:543 final size:542
Alignment explanation
Indices: 60695--62314 Score: 1910
Period size: 543 Copynumber: 3.0 Consensus size: 542
60685 AAACCACCAA
* *
60695 TTCCTCCCCGCTGGCCGTTCTCTTCGATTTTCGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGA
1 TTCCTCCCAGCT-GCCGTCCTCTTCGATTTTCGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGA
* * * * *
60760 TTCTTAAGAGAATTGACCTC-AGATTCTAGTTCCTCCGTATGTGCCAGCAAGCCCTCTTTCTCCA
65 TTCTTAAGAGAATTGACCTCAAG-TTCTAGTTCCTTCGTTTGTGTCAGCAAACCCTCTTTCTCCT
* *
60824 GCAGAACTCTTTGTTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGACTTTTCTATTTCAATC
129 GCAGAACTCTTTGCTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGACTTTTCTATCTCAATC
*
60889 ACA-AGATCTGAAACAACTTGAGTTTTACTCTCAAGCTGAACTT-CAAGTTCTGCTTTCTGGCTA
194 ACATA-ATCTGAAATAACTTGAGTTTTACTCTCAAGCTGAACTTCCAA-TTCTGCTTTCTGGCTA
* * *
60952 TGCAGGGACTCCAGCTCCTGCTGCAATGTATTTATCTGATCCATCAAGCTCTTTACCT-GTCGAC
257 TGCAGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACCTAGTCGAT
* * * * * **
61016 GTTTCATCGCCTTTTACTACAATATGCTCTTCCAACTGAGCTTTCTGAGTCCGCAACAACTCCAT
322 GCTTCATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGAGTGCGTAATGACTCCAT
* * * * * * *
61081 GTCTACTAGCAGGTTATTAATCTGCATTGTCAAATTCTCCACTCTAGACAATGATTCTTTCTCCT
387 GTCTGCTACCAGATTGTTGATCTGCAATGTCAAATTCTCCACTCTAGA-AATGATTCTTTCTCAT
* * *
61146 TGTCCTCAAAATT-ATTTGTGAGAATCAAAAGTTCTTCTTGTCTCTGCTTTGATATCATCTCTAG
451 TGTCCTCAAAATTCA-TTGTGAGAGTCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGAG
* *
61210 TTCTGAAATTTGGGATTGCAGTGCTGTAT
515 TTCT-AAATTTGGGATTGCAGTACTCTAT
* * *
61239 TTCCTCCCTCAACTTGCCGTCCTCTTC-ATTTTCGTTCTCAAGCCCTCTTCCAGCTCACCTTTCT
1 TTCCT-CC-CAGC-TGCCGTCCTCTTCGATTTTCGTTCTCAAGTCCTCTTCCAGTTCACCTTTCT
* * * * * * ** ** * *
61303 GATTTTTCACAGAATTTAACTCAAATTCTAGTTTGTTTATTTGTGTCA-AAAAACCTCTTTCTCC
63 GATTCTTAAGAGAATTGACCTCAAGTTCTAGTTCCTTCGTTTGTGTCAGCAAACCCTCTTTCTCC
** * * * * *
61367 TGCACCATTCTTAGCTGATCCTCGGTCTTGCTTACTATCTCTTCTTTTGTCTTTTCTA-C-CGAT
128 TGCAGAACTCTTTGCTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGACTTTTCTATCTCAAT
* * * *
61430 CACATAATCTGATATATCTTG-GTTTTTCCTCTCAAGCTGCACTTCCAATTCTGCTTTCTGG-TC
193 CACATAATCTGAAATAACTTGAG-TTTTACTCTCAAGCTGAACTTCCAATTCTGCTTTCTGGCT-
* *
61493 ATTCAGGGACCCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACCTGAGTCG
256 ATGCAGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACCT-AGTCG
* *
61558 ATGCTTCATCGCCTTTCACTACAATATGTTCTTCCAACCGAGCTTTCTG-GTGCGTAATGATTCC
320 ATGCTTCATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGAGTGCGTAATGACTCC
* *
61622 ATGTCTGCTACCATATTGTTGATCTGCAATGTCAAATTCTCCACTCTAGATAATGATTCTTTCTT
385 ATGTCTGCTACCAGATTGTTGATCTGCAATGTCAAATTCTCCACTCTAGA-AATGATTCTTTCTC
* * * * * * *
61687 GTTATCCTCAAACTTCATTGTGAGTGTCGACAGTTCTTCATGTCTC-GTTTTGATATCATCTCGA
449 ATTGTCCTCAAAATTCATTGTGAGAGTCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGA
* *
61751 GCTCTAAAATTTGGGACTGCAGTACTCTATT
514 GTTCT-AAATTTGGGATTGCAGTACTCTA-T
* * *
61782 TTCCT-CCAGCTGACCGTCCTCTTCGA-TTTAGTTCTTAAGTCCTCTTCCAATTCACCTTTCTGA
1 TTCCTCCCAGCTG-CCGTCCTCTTCGATTTTCGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGA
* *
61845 TTCCTT-AGATAATTGACCTCAAGTTCTAGTTCCTTCGTTTGTGTCAGCAAACCCTCGTTCTCCT
65 TT-CTTAAGAGAATTGACCTCAAGTTCTAGTTCCTTCGTTTGTGTCAGCAAACCCTCTTTCTCCT
* * * * * *
61909 GCAGGACTCTTTGCTGATCCTCAGTCATGATTAATATCTCTTCTTTCGCCTTTTCTATCTCAATC
129 GCAGAACTCTTTGCTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGACTTTTCTATCTCAATC
* * **
61974 ACATAATCTGAGATAGCTTGAGTTTTACTCTCAAGCTGAACTTCCAGCTCTGCTTTCTGGCTATG
194 ACATAATCTGAAATAACTTGAGTTTTACTCTCAAGCTGAACTTCCAATTCTGCTTTCTGGCTATG
* * * * * *
62039 CAGGGACTCCATCTCCAGCTGCAAGGTATTTATTTGATCCATCAAGCTCTTGACTTCAGTTGATG
259 CAGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACCT-AGTCGATG
* * * * * *
62104 CTTCATC-ACTTTCAATGCAATATGTTCTTCCAACTGAGCTTTCTGTGTGCGTAGTGACTCCAAG
323 CTTCATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGAGTGCGTAATGACTCCATG
* * * * *
62168 TCCGCTACCAGATCGCTGATCTG-AATTGTCAAATTTTCCACTCTAGACATCGATTC-TTCTCAT
388 TCTGCTACCAGATTGTTGATCTGCAA-TGTCAAATTCTCCACTCTAGAAAT-GATTCTTTCTCAT
* * * * * *
62231 TGTCCTCGAATTTCTTTGAGAGAGTCAAAAGTTCTTCTTCTCTCTGTTTTGACATCATCTCGAGT
451 TGTCCTCAAAATTCATTGTGAGAGTCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGAGT
*
62296 TCTGAATTTGGGATTGCAG
516 TCTAAATTTGGGATTGCAG
62315 CCTTATATTT
Statistics
Matches: 904, Mismatches: 148, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
539 2 0.00
540 79 0.09
541 67 0.07
542 238 0.26
543 314 0.35
544 119 0.13
545 70 0.08
546 14 0.02
547 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (542 bp):
TTCCTCCCAGCTGCCGTCCTCTTCGATTTTCGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGAT
TCTTAAGAGAATTGACCTCAAGTTCTAGTTCCTTCGTTTGTGTCAGCAAACCCTCTTTCTCCTGC
AGAACTCTTTGCTGATCCTCAGTCTTGCTTACTATCTCTTCTTTTGACTTTTCTATCTCAATCAC
ATAATCTGAAATAACTTGAGTTTTACTCTCAAGCTGAACTTCCAATTCTGCTTTCTGGCTATGCA
GGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACCTAGTCGATGCTT
CATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGAGTGCGTAATGACTCCATGTCT
GCTACCAGATTGTTGATCTGCAATGTCAAATTCTCCACTCTAGAAATGATTCTTTCTCATTGTCC
TCAAAATTCATTGTGAGAGTCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGAGTTCTAA
ATTTGGGATTGCAGTACTCTAT
Done.