genome.fa.s7292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007292.1 Hibiscus syriacus cultivar Beakdansim tig00019385_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122788

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773--797	13	1.9	13	100	0	50	8	16	44	32	1.76
10644--10874	55	4.2	55	84	1	311	37	18	16	28	1.92
19376--19654	55	5.1	55	89	0	398	37	19	15	27	1.92
22953--23054	51	2.0	51	98	0	195	27	11	26	34	1.91
26318--26434	29	4.0	30	81	4	116	17	31	31	19	1.95
26480--26531	22	2.4	22	93	3	88	15	32	30	21	1.94
26535--26596	31	2.0	31	93	0	106	24	37	14	24	1.93
28015--28061	24	2.0	24	83	8	60	63	2	2	31	1.18
28472--28534	32	1.9	33	87	3	92	44	4	4	46	1.45
29192--29238	21	2.2	21	85	7	69	21	23	17	38	1.93
29234--29327	41	2.3	41	85	1	118	40	18	20	21	1.92
29234--29327	20	4.7	20	81	2	116	40	18	20	21	1.92
29939--30001	33	1.9	33	90	0	99	14	22	17	46	1.84
29978--30041	20	3.1	21	82	8	78	10	25	17	46	1.80
31848--31889	17	2.5	17	96	0	75	28	16	14	40	1.88
31770--31983	111	2.0	110	91	5	355	21	13	18	47	1.82
32111--32234	33	3.5	35	83	11	139	48	20	20	9	1.78
32111--32239	20	7.2	19	76	19	116	48	20	20	9	1.77
32137--32234	33	2.9	33	90	1	151	47	24	19	8	1.76
32250--32329	19	4.4	19	77	16	89	10	18	25	46	1.80
32743--32809	21	3.2	21	66	6	55	23	35	20	19	1.95
32691--32809	42	2.8	42	81	5	107	22	36	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34160--34195	14	2.6	14	95	0	63	33	0	22	44	1.53
34302--34353	19	2.7	19	90	0	86	48	21	19	11	1.80
34364--34489	33	3.8	33	95	0	225	12	23	19	45	1.84
34365--34509	19	8.4	18	68	21	89	13	23	19	44	1.85
34384--34471	14	5.6	14	67	23	50	12	23	19	44	1.85
34462--34555	20	4.7	20	72	13	68	21	20	23	35	1.96
37946--38155	41	5.2	40	90	3	289	40	17	21	21	1.92
37935--38144	61	3.4	61	90	3	309	39	16	21	22	1.92
37946--38147	20	9.9	20	86	5	280	40	16	21	21	1.92
38163--38215	20	2.7	20	90	0	88	22	18	20	37	1.94
38212--38257	21	2.2	21	88	0	65	36	17	28	17	1.92
41153--41210	31	1.9	31	83	13	77	53	5	0	41	1.23
43836--43889	26	2.1	26	82	6	65	50	12	3	33	1.59
49174--49220	12	3.9	12	100	0	94	17	23	25	34	1.96
49176--49252	22	3.4	22	81	3	73	20	20	15	42	1.88
50086--50133	21	2.3	21	96	0	87	37	12	25	25	1.91
53972--54023	2	26.0	2	100	0	104	50	0	0	50	1.00
54023--54059	2	18.5	2	94	0	65	2	0	45	51	1.15
55262--55303	8	5.4	8	82	5	50	45	4	0	50	1.23
55937--56362	36	12.1	36	73	13	307	41	12	19	26	1.86
55942--56045	37	2.9	37	83	8	124	45	16	17	21	1.86
55937--56357	174	2.4	174	89	1	648	42	12	19	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56105--56362	138	1.9	137	86	4	367	41	11	19	27	1.86
56268--56332	21	3.4	21	68	24	70	44	9	20	26	1.81
56273--56332	19	3.3	19	68	25	56	45	8	20	26	1.79
57731--57909	95	1.9	95	91	0	295	31	18	17	32	1.94
60127--60164	18	2.0	20	85	10	53	21	18	18	42	1.90
60781--60824	21	2.2	19	84	8	52	72	0	9	18	1.10
60781--60832	23	2.5	19	79	14	50	73	0	9	17	1.09
61723--61802	14	5.4	14	69	20	56	77	0	8	13	0.99
61708--61799	21	4.4	21	72	12	73	73	1	9	15	1.13
61917--61988	21	3.4	22	68	22	55	68	1	13	16	1.29
62043--62144	13	7.6	13	67	20	50	69	3	0	25	1.12
62035--62095	26	2.2	28	83	11	74	62	1	1	34	1.15
63370--63472	21	5.0	21	84	4	131	25	20	27	27	1.99
63436--63470	18	1.9	18	88	0	52	20	20	34	25	1.96
68889--68988	21	4.5	22	83	13	118	33	15	26	26	1.95
68868--68988	21	5.6	21	79	16	106	32	14	28	24	1.95
68866--68988	44	2.8	44	84	10	139	32	14	28	24	1.95
74055--74613	279	2.0	279	89	3	867	33	19	16	29	1.94
75059--75235	75	2.3	75	88	1	246	22	23	30	23	1.99
75588--75626	19	2.1	19	100	0	78	46	15	0	38	1.46
77870--77909	21	1.9	21	89	0	62	10	25	40	25	1.86
81758--81797	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83718--83920	74	2.7	75	86	2	264	21	24	31	22	1.98
84563--84637	22	3.7	19	80	16	80	17	20	37	25	1.94
89932--90062	59	2.2	60	82	4	158	17	13	11	57	1.65
89930--90064	30	4.5	30	79	1	137	17	14	11	56	1.67
91288--91329	17	2.5	17	92	0	66	30	4	14	50	1.63
92416--92455	21	2.0	20	85	5	53	17	20	15	47	1.83
93712--93790	35	2.3	36	81	16	96	70	8	13	6	1.31
93761--93794	13	2.6	13	95	0	59	76	5	11	5	1.14
95339--95652	134	2.3	134	87	1	441	24	34	17	23	1.96
95870--95906	3	12.3	3	88	11	58	35	0	0	64	0.94
97322--97498	30	6.0	30	73	10	132	19	12	9	58	1.62
97322--97453	60	2.2	60	84	2	176	17	12	10	59	1.61
103243--103297	24	2.3	24	83	0	74	27	30	10	30	1.91
105652--105695	22	2.1	21	88	12	65	27	6	0	65	1.17
105831--105878	25	1.9	24	83	8	60	27	8	4	60	1.44
109548--109667	62	1.9	63	83	11	158	46	5	2	45	1.38
122005--122029	12	2.1	12	100	0	50	8	20	8	64	1.46

Tables:   1

The End!