genome.fa.s7293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007293.1 Hibiscus syriacus cultivar Beakdansim tig00019391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160342

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11834--11961	62	2.1	62	90	0	202	35	16	19	28	1.93
14608--14642	11	3.2	11	95	0	61	11	0	82	5	0.82
32357--32392	16	2.1	19	85	15	51	66	0	2	30	1.06
35871--35914	13	3.3	13	84	12	54	50	0	0	50	1.00
35898--35945	22	2.2	22	88	7	71	39	2	0	58	1.10
36013--36144	60	2.2	61	81	8	146	34	18	5	42	1.73
43185--43224	19	2.1	19	95	0	71	50	0	0	50	1.00
48477--48538	30	2.1	29	84	3	79	25	8	12	53	1.66
48500--48574	28	2.6	29	81	8	82	21	9	13	56	1.65
49784--49974	101	1.9	102	87	1	285	45	5	13	35	1.67
50285--50318	18	1.9	17	88	5	50	61	0	0	38	0.96
50648--51018	185	2.0	184	92	2	620	41	3	8	45	1.53
52167--52265	42	2.4	42	80	11	98	33	13	5	48	1.64
52185--52268	42	2.0	42	88	0	123	32	15	5	46	1.70
52171--52245	20	3.6	21	70	13	57	29	13	6	50	1.66
52341--52485	73	2.0	73	100	0	290	31	38	6	22	1.81
56072--56109	19	2.0	20	85	15	53	65	5	0	28	1.14
57473--57528	24	2.3	23	85	11	69	55	16	12	16	1.70
58632--58682	19	2.6	20	90	3	77	43	23	17	15	1.88
58632--58898	20	13.1	20	75	6	115	39	19	22	18	1.92
58776--58898	63	2.0	63	91	0	201	34	17	27	19	1.95
58736--58894	83	1.9	83	88	0	237	34	17	26	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58963--59067	6	17.5	6	100	0	210	33	50	16	0	1.45
59753--59813	6	10.5	6	98	1	108	0	16	52	31	1.44
59891--59930	20	2.0	20	90	0	62	12	17	17	52	1.74
59923--60114	20	9.3	20	83	5	195	19	26	18	35	1.95
59923--60074	63	2.5	62	86	3	218	18	26	18	36	1.94
59932--60114	83	2.2	83	88	1	260	20	26	18	35	1.95
59921--60322	20	19.6	20	75	9	184	19	21	20	38	1.94
60245--60327	21	4.0	21	73	6	78	25	16	24	33	1.96
61741--61772	3	10.7	3	100	0	64	31	0	0	68	0.90
61959--61989	3	10.3	3	100	0	62	32	0	0	67	0.91
66197--66224	2	14.0	2	100	0	56	50	0	0	50	1.00
67724--67810	44	2.0	44	93	4	149	19	10	14	55	1.68
67831--67875	23	2.0	23	90	0	72	31	17	15	35	1.92
69573--69621	2	24.5	2	100	0	98	51	0	0	48	1.00
75421--75519	21	4.8	20	75	6	81	37	23	18	21	1.94
75486--75679	20	9.6	20	79	5	203	36	25	19	19	1.95
75486--75679	60	3.2	60	80	0	235	36	25	19	19	1.95
76057--76125	32	2.2	32	91	0	111	11	21	20	46	1.82
76057--76106	18	3.0	18	69	22	54	12	22	22	44	1.85
76208--76317	21	5.8	20	74	17	108	45	18	24	11	1.83
76201--76317	41	3.1	38	81	14	145	46	17	25	11	1.81
76268--76324	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76260--76340	33	2.5	33	95	0	144	46	22	22	8	1.78
76341--76433	19	5.4	19	66	23	71	9	21	22	46	1.80
76358--76447	14	5.7	14	72	23	72	8	24	23	43	1.82
76341--76455	33	3.5	33	96	0	212	9	22	20	46	1.79
78147--78522	93	4.1	93	98	0	727	22	12	19	45	1.83
78570--78698	19	7.3	19	75	17	125	45	28	17	8	1.77
78606--78698	33	2.8	32	91	4	150	46	27	18	7	1.76
78570--78698	52	2.5	52	74	14	140	45	28	17	8	1.77
78694--78828	19	7.6	19	75	16	128	11	19	23	45	1.82
78716--78772	14	3.7	14	77	20	60	10	21	22	45	1.82
78699--78791	33	2.8	33	95	0	168	10	20	21	47	1.80
80746--80781	14	2.6	14	95	0	63	33	0	22	44	1.53
80887--80984	19	5.4	19	84	13	143	45	17	22	14	1.84
80887--81002	53	2.2	53	98	1	225	43	18	24	13	1.86
81009--81321	157	2.0	154	96	3	583	13	23	17	45	1.84
81009--81321	52	6.0	52	97	2	587	13	23	17	45	1.84
81049--81363	33	9.2	33	73	17	270	13	22	18	45	1.84
83843--83889	24	2.0	24	87	8	69	38	21	14	25	1.92
84569--84798	20	11.5	20	84	3	221	20	17	24	37	1.94
84765--84862	21	4.8	20	75	15	83	22	17	22	37	1.94
84765--84863	42	2.4	43	78	8	107	22	17	23	37	1.94
85672--85776	48	2.2	48	96	0	192	55	12	7	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92936--93016	40	2.0	40	100	0	162	24	17	16	41	1.89
94082--94115	17	2.1	17	88	5	52	47	5	0	47	1.26
94146--94219	36	2.1	36	100	0	148	24	17	32	25	1.97
95866--96489	313	2.0	308	88	2	926	20	18	23	36	1.95
102576--102623	23	2.1	23	100	0	96	52	18	4	25	1.63
102770--102810	20	2.2	18	86	8	55	26	2	0	70	0.99
105256--105307	25	2.0	26	85	10	72	5	19	11	63	1.47
115346--115408	29	2.2	29	91	5	101	14	30	33	22	1.93
115500--115590	20	4.2	22	84	8	77	12	35	27	25	1.91
115538--115589	20	2.6	20	93	0	86	13	30	28	26	1.94
115649--115711	29	2.2	29	85	0	90	22	25	38	14	1.92
119649--119688	21	1.9	21	84	0	53	42	2	12	42	1.56
121550--121582	16	2.1	16	94	0	57	39	21	6	33	1.78
124044--124103	27	2.2	27	85	5	77	38	13	11	36	1.81
138662--138686	13	1.9	13	100	0	50	36	0	8	56	1.29
139639--139693	20	2.8	19	79	15	58	69	7	14	9	1.36
144819--144848	14	2.1	14	100	0	60	53	6	30	10	1.60
145810--145853	5	8.8	5	94	0	70	22	15	0	61	1.34
149383--149410	2	14.0	2	100	0	56	50	0	0	50	1.00
149687--149749	31	2.1	30	90	3	99	46	9	6	38	1.62
149701--149793	31	3.1	30	80	13	93	47	13	6	32	1.69
151061--151085	12	2.1	12	100	0	50	48	0	24	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153373--153439	29	2.3	28	82	12	73	52	4	4	38	1.42
153604--153644	21	2.1	19	86	9	55	43	0	2	53	1.13

Tables:   1

The End!