Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007294.1 Hibiscus syriacus cultivar Beakdansim tig00019400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91173
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:5261 original size:18 final size:18
Alignment explanation
Indices: 5234--5279 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
5224 TCTTCTACCA
5234 CCCC-CCTCGTGTTCTAT
1 CCCCACCTCGTGTTCTAT
5251 CCCCACCTCGTGTTCTAT
1 CCCCACCTCGTGTTCTAT
5269 CCCCACCTCGT
1 CCCCACCTCGT
5280 CTTACTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 4 0.14
18 24 0.86
ACGTcount: A:0.09, C:0.50, G:0.11, T:0.30
Consensus pattern (18 bp):
CCCCACCTCGTGTTCTAT
Found at i:8353 original size:25 final size:25
Alignment explanation
Indices: 8324--8380 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
8314 AGGAGTGGTA
8324 AGCTAAGCGTCGAGAGGAGCTAG-G
1 AGCTAAGCGTCGAGAGGAGCTAGCG
8348 TAGCTAAGCGTCGAGAGGAGCTAGCG
1 -AGCTAAGCGTCGAGAGGAGCTAGCG
8374 AGCTAAG
1 AGCTAAG
8381 GTGGTTCGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 30 0.97
26 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.39, T:0.14
Consensus pattern (25 bp):
AGCTAAGCGTCGAGAGGAGCTAGCG
Found at i:15483 original size:26 final size:25
Alignment explanation
Indices: 15437--15510 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
15427 TCTCAATTTT
* *
15437 TTAACTTTTTATTTTCTATTTCATCC
1 TTAACTTTTTCTTTTC-ATTTCAACC
* *
15463 TTAACTTTTTCTATTTCATTTTAACT
1 TTAACTTTTTCT-TTTCATTTCAACC
*
15489 TTTACTTTTTCTCTTTCATTTC
1 TTAACTTTTTCT-TTTCATTTC
15511 TTCATCTTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 36 0.90
27 4 0.10
ACGTcount: A:0.18, C:0.19, G:0.00, T:0.64
Consensus pattern (25 bp):
TTAACTTTTTCTTTTCATTTCAACC
Found at i:15486 original size:20 final size:21
Alignment explanation
Indices: 15448--15491 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
15438 TAACTTTTTA
15448 TTTTCTATTTCATCCTTAACT
1 TTTTCTATTTCATCCTTAACT
*
15469 TTTTCTATTTCAT-TTTAACT
1 TTTTCTATTTCATCCTTAACT
15489 TTT
1 TTT
15492 ACTTTTTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTCTATTTCATCCTTAACT
Found at i:16997 original size:10 final size:10
Alignment explanation
Indices: 16984--17009 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16974 TTCATTTAGT
16984 TTGCATTTCA
1 TTGCATTTCA
16994 TTGCATTTCA
1 TTGCATTTCA
17004 TTGCAT
1 TTGCAT
17010 GACATTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (10 bp):
TTGCATTTCA
Found at i:22015 original size:13 final size:13
Alignment explanation
Indices: 21971--22023 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
21961 TCTGCACAAT
21971 ATAAAGAAA-GAA
1 ATAAAGAAATGAA
* **
21983 ATGATTAAATGGAA
1 ATAAAGAAAT-GAA
21997 AT-AAGAAATGAA
1 ATAAAGAAATGAA
22009 ATAAAGAAATGAA
1 ATAAAGAAATGAA
22022 AT
1 AT
22024 GGATAGAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
12 11 0.33
13 17 0.52
14 5 0.15
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (13 bp):
ATAAAGAAATGAA
Found at i:24282 original size:24 final size:24
Alignment explanation
Indices: 24255--24307 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
24245 TTAAAACATC
24255 AAGAGACATGTCTTGTGAATCACA
1 AAGAGACATGTCTTGTGAATCACA
*
24279 AAGAGACATGTCTTGTGGATCACA
1 AAGAGACATGTCTTGTGAATCACA
24303 AAGAG
1 AAGAG
24308 TCACGCATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (24 bp):
AAGAGACATGTCTTGTGAATCACA
Found at i:25727 original size:6 final size:6
Alignment explanation
Indices: 25698--25731 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
25688 ATGTCTTTTG
*
25698 TTTTCT TTTTGT TTTTCT TATTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT TTT
25732 GTTGCAGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:25727 original size:13 final size:12
Alignment explanation
Indices: 25698--25731 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
25688 ATGTCTTTTG
*
25698 TTTTCTTTTTGT
1 TTTTCTTTTTCT
25710 TTTTCTTATTTCT
1 TTTTCTT-TTTCT
25723 TTTTCTTTT
1 TTTTCTTTT
25732 GTTGCAGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:25936 original size:13 final size:13
Alignment explanation
Indices: 25892--25959 Score: 59
Period size: 13 Copynumber: 5.2 Consensus size: 13
25882 TCTGCACAAT
25892 ATAAAGAAAT-AA
1 ATAAAGAAATGAA
* **
25904 ATGATTAAATGGAA
1 ATAAAGAAAT-GAA
25918 AT-AAGAAATGAA
1 ATAAAGAAATGAA
25930 ATAAAGAAATGAA
1 ATAAAGAAATGAA
*
25943 AGGATAAGAAATGAA
1 A-TA-AAGAAATGAA
25958 AT
1 AT
25960 GGATAGAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
12 12 0.27
13 16 0.36
14 5 0.11
15 11 0.25
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.19
Consensus pattern (13 bp):
ATAAAGAAATGAA
Found at i:25963 original size:16 final size:16
Alignment explanation
Indices: 25918--25964 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 16
25908 TTAAATGGAA
25918 ATAAGAAATGAAAT--
1 ATAAGAAATGAAATGG
25932 A-AAGAAATGAAA-GG
1 ATAAGAAATGAAATGG
25946 ATAAGAAATGAAATGG
1 ATAAGAAATGAAATGG
25962 ATA
1 ATA
25965 GAGATGTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 11 0.38
14 2 0.07
15 11 0.38
16 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (16 bp):
ATAAGAAATGAAATGG
Found at i:31245 original size:14 final size:14
Alignment explanation
Indices: 31226--31259 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
31216 GTTTTGCATC
31226 AAAAAGAAAATAAA
1 AAAAAGAAAATAAA
* *
31240 AAAAAGAACATAAG
1 AAAAAGAAAATAAA
31254 AAAAAG
1 AAAAAG
31260 GCACTAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (14 bp):
AAAAAGAAAATAAA
Found at i:31296 original size:19 final size:20
Alignment explanation
Indices: 31274--31320 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
31264 TAAGAAAGAG
31274 AAAAAAACCAAAAAAT-TAA
1 AAAAAAACCAAAAAATGTAA
** *
31293 AAAAATTCCAGAAAATGTAA
1 AAAAAAACCAAAAAATGTAA
31313 AAGAAAAA
1 AA-AAAAA
31321 TGCACAAAGA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
19 13 0.62
20 5 0.24
21 3 0.14
ACGTcount: A:0.72, C:0.09, G:0.06, T:0.13
Consensus pattern (20 bp):
AAAAAAACCAAAAAATGTAA
Found at i:41992 original size:29 final size:29
Alignment explanation
Indices: 41957--42024 Score: 127
Period size: 29 Copynumber: 2.3 Consensus size: 29
41947 CATGGACACT
41957 ATTTTTGTTTAAAGAGTAATAAAAGAGAA
1 ATTTTTGTTTAAAGAGTAATAAAAGAGAA
*
41986 ATTTTTGTTTAAAGCGTAATAAAAGAGAA
1 ATTTTTGTTTAAAGAGTAATAAAAGAGAA
42015 ATTTTTGTTT
1 ATTTTTGTTT
42025 TAAGTTTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.41, C:0.01, G:0.16, T:0.41
Consensus pattern (29 bp):
ATTTTTGTTTAAAGAGTAATAAAAGAGAA
Found at i:46693 original size:18 final size:18
Alignment explanation
Indices: 46670--46708 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
46660 TGCAAATGAT
46670 ATCTCTCTAACAATAGAC
1 ATCTCTCTAACAATAGAC
46688 ATCTCTCTAACAATAGAC
1 ATCTCTCTAACAATAGAC
46706 ATC
1 ATC
46709 AATCTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.28
Consensus pattern (18 bp):
ATCTCTCTAACAATAGAC
Found at i:49947 original size:2 final size:2
Alignment explanation
Indices: 49942--49966 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49932 TAAAAAAACA
49942 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
49967 CATTTTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:52331 original size:20 final size:21
Alignment explanation
Indices: 52306--52364 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
52296 GTGCACTTAA
52306 TATCGATATTGTTCAT-ATAG
1 TATCGATATTGTTCATCATAG
* ** *
52326 TATCGATACTGTTTTTGCTTAG
1 TATCGATATTGTTCAT-CATAG
52348 TATCGATATTGTTCATC
1 TATCGATATTGTTCATC
52365 CAGTACCGAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 13 0.43
21 1 0.03
22 16 0.53
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (21 bp):
TATCGATATTGTTCATCATAG
Found at i:52886 original size:14 final size:15
Alignment explanation
Indices: 52867--52905 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
52857 TGTATATACT
52867 ATTGTTTTTCA-AAA
1 ATTGTTTTTCACAAA
52881 ATTGTTTTTCACAAA
1 ATTGTTTTTCACAAA
* *
52896 GTTTTTTTTC
1 ATTGTTTTTC
52906 CTGTAGCCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.26, C:0.10, G:0.08, T:0.56
Consensus pattern (15 bp):
ATTGTTTTTCACAAA
Found at i:53932 original size:12 final size:12
Alignment explanation
Indices: 53915--53954 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
53905 TCTTCACGAG
*
53915 CAGCTCTGGCTC
1 CAGCTCCGGCTC
53927 CAGCTCCGGCTC
1 CAGCTCCGGCTC
53939 C-GACTCCGGCTC
1 CAG-CTCCGGCTC
53951 CAGC
1 CAGC
53955 ACCATCTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.10, C:0.47, G:0.25, T:0.17
Consensus pattern (12 bp):
CAGCTCCGGCTC
Found at i:64135 original size:3 final size:3
Alignment explanation
Indices: 64127--64188 Score: 65
Period size: 3 Copynumber: 20.7 Consensus size: 3
64117 ATGATATTAG
* * *
64127 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TCA TAC T-A TAG TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
64172 TAA TAA TTAA T-A TAA TA
1 TAA TAA -TAA TAA TAA TA
64189 TATATTTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
2 3 0.06
3 41 0.84
4 5 0.10
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:64730 original size:91 final size:92
Alignment explanation
Indices: 64568--64734 Score: 255
Period size: 91 Copynumber: 1.8 Consensus size: 92
64558 TCGAACAAGC
* * *
64568 TCTTCTCATTATGAACTTCTTCTCCCTCTTTCGGATGCGTTATTCTCATTATGAACTCTTCATTG
1 TCTTCTCATTATGAACTTCTTCTCCCTCATTCGGATGAGTTATTCTCATTATGAACTCTCCATTG
64633 AAAATGTTGATGCGAAGTTGAATAAGT
66 AAAATGTTGATGCGAAGTTGAATAAGT
* * *
64660 TCTTCTCATTATGAACTTCTTCTTCCTCATT-GGATGAGTTCTTTTCATTATGAACTCTCCATTG
1 TCTTCTCATTATGAACTTCTTCTCCCTCATTCGGATGAGTTATTCTCATTATGAACTCTCCATTG
**
64724 GTAATGTTGAT
66 AAAATGTTGAT
64735 CCATCTCTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
91 38 0.57
92 29 0.43
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.44
Consensus pattern (92 bp):
TCTTCTCATTATGAACTTCTTCTCCCTCATTCGGATGAGTTATTCTCATTATGAACTCTCCATTG
AAAATGTTGATGCGAAGTTGAATAAGT
Found at i:65864 original size:17 final size:17
Alignment explanation
Indices: 65842--65875 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
65832 CATTTTTCTC
65842 TTTTCAT-TTTTTCATTT
1 TTTTCATCTTTTT-ATTT
65859 TTTTCATCTTTTTATTT
1 TTTTCATCTTTTTATTT
65876 GTTCCTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCATCTTTTTATTT
Found at i:65868 original size:25 final size:24
Alignment explanation
Indices: 65834--65889 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 24
65824 CAAACCCTCA
*
65834 TTTTTCTCTTTTCATTTTTTCATT
1 TTTTTCTCTTTTCATTTGTTCATT
* *
65858 TTTTTCATCTTTTTATTTGTTCCTT
1 TTTTTC-TCTTTTCATTTGTTCATT
65883 TTTTTCT
1 TTTTTCT
65890 TCAAGCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTTTCTCTTTTCATTTGTTCATT
Found at i:77911 original size:3 final size:3
Alignment explanation
Indices: 77903--77954 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
77893 ATGATATTAG
77903 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
77951 TAA T
1 TAA T
77955 TATTATTATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:86989 original size:14 final size:15
Alignment explanation
Indices: 86961--86989 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86951 ACCTGACCCG
86961 AAATAATATTTATTA
1 AAATAATATTTATTA
86976 AAATAATA-TTATTA
1 AAATAATATTTATTA
86990 TTTGTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATAATATTTATTA
Found at i:87370 original size:23 final size:21
Alignment explanation
Indices: 87319--87372 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 21
87309 CAGAAAAATT
* * *
87319 ATCCCTTTTGAAAAATGATCG
1 ATCCCTTTTGAAAAAGGACCC
*
87340 ATCTCTTTTGAAAAAAGGGACCC
1 ATCCCTTTTG-AAAAA-GGACCC
87363 ATCCCTTTTG
1 ATCCCTTTTG
87373 GAAGTTTAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 9 0.35
22 5 0.19
23 12 0.46
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (21 bp):
ATCCCTTTTGAAAAAGGACCC
Found at i:87768 original size:74 final size:73
Alignment explanation
Indices: 87657--87841 Score: 264
Period size: 74 Copynumber: 2.5 Consensus size: 73
87647 TATGTAGAGA
*
87657 GTACTGATACCCCTCATAGGGTGTACCGATACCCCTATGCCAA-TTTTGGCTCCGAGAAAAATAG
1 GTACCGATACCCC-CATA-GG-GTACCGATACCCCTATG-CAAGTTTTGGCTCCGAGAAAAATAG
*
87721 ATTGCCCAATGG
62 AATGCCCAATGG
87733 GTACCGATACCCCACATAGGGTACCGATACCCCTATGCAAGTTTTGGCTCCGAGAAAAATAGAAT
1 GTACCGATACCCC-CATAGGGTACCGATACCCCTATGCAAGTTTTGGCTCCGAGAAAAATAGAAT
**
87798 GCCTTATGG
65 GCCCAATGG
*
87807 GTACCGATACCCCCGTAGAGGTACCGATACCCCTA
1 GTACCGATACCCCCATAG-GGTACCGATACCCCTA
87842 GTCTTTTAAC
Statistics
Matches: 101, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
73 7 0.07
74 76 0.75
75 2 0.02
76 16 0.16
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (73 bp):
GTACCGATACCCCCATAGGGTACCGATACCCCTATGCAAGTTTTGGCTCCGAGAAAAATAGAATG
CCCAATGG
Found at i:90520 original size:21 final size:22
Alignment explanation
Indices: 90496--90540 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
90486 GAAATAAAAT
90496 TTGTTTTGATTTAAAT-TGTTG
1 TTGTTTTGATTTAAATATGTTG
* *
90517 TTGTTTTTATTTAATTATGTTG
1 TTGTTTTGATTTAAATATGTTG
90539 TT
1 TT
90541 TTCATGAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.67
Consensus pattern (22 bp):
TTGTTTTGATTTAAATATGTTG
Done.