genome.fa.s7296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007296.1 Hibiscus syriacus cultivar Beakdansim tig00019408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76119

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2714--2769	17	3.3	17	78	9	60	44	8	17	28	1.79
2712--2794	34	2.4	34	86	4	105	45	10	14	28	1.78
2780--2834	17	3.2	17	73	14	51	41	12	14	30	1.83
5697--5758	23	2.8	22	82	4	79	4	22	0	72	1.03
5697--5758	22	2.7	22	87	5	79	4	22	0	72	1.03
6565--6641	30	2.7	29	84	6	95	41	1	9	48	1.43
9835--9909	32	2.3	32	83	0	87	24	17	21	37	1.94
11455--11492	16	2.4	16	90	0	58	44	7	21	26	1.79
11463--11494	16	2.0	16	100	0	64	37	6	18	37	1.76
12402--12445	2	22.0	2	100	0	88	50	0	0	50	1.00
14096--14492	55	7.2	54	83	5	408	29	20	17	32	1.96
14096--14492	110	3.6	110	82	4	455	29	20	17	32	1.96
14120--14492	165	2.3	165	86	1	498	29	20	17	32	1.95
19166--19480	55	5.9	55	83	5	358	29	19	18	32	1.96
19166--19454	103	2.7	104	84	5	348	29	19	18	32	1.95
19821--19874	19	2.6	22	80	8	69	25	20	18	35	1.95
19901--19950	20	2.5	20	90	6	75	20	28	14	38	1.91
26867--26898	14	2.3	14	94	0	55	28	0	9	62	1.26
26930--26981	26	2.0	25	81	3	59	55	0	25	19	1.43
36842--37023	94	1.9	94	87	3	267	27	18	11	42	1.85
37511--37555	23	2.0	23	90	0	72	51	6	15	26	1.68
38142--38318	90	2.0	89	93	1	300	37	11	6	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47302--47335	12	2.8	12	95	0	59	29	50	20	0	1.49
53085--53730	134	4.8	135	74	8	355	32	14	16	36	1.89
53517--53775	134	1.9	132	82	3	322	31	13	16	38	1.87
55887--55950	20	3.2	20	70	2	56	29	14	25	31	1.94
60546--60595	20	2.5	20	90	0	82	36	30	10	24	1.88
73916--74040	35	3.6	34	77	5	133	28	17	17	36	1.93

Tables:   1

The End!