genome.fa.s7297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007297.1 Hibiscus syriacus cultivar Beakdansim tig00019410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87326

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651--676	11	2.4	11	100	0	52	34	0	11	53	1.37
731--755	11	2.3	11	100	0	50	36	0	8	56	1.29
850--912	13	4.8	14	75	15	71	28	26	11	33	1.91
850--912	26	2.4	26	94	0	108	28	26	11	33	1.91
8181--8206	11	2.4	11	100	0	52	34	0	11	53	1.37
10155--11646	4	374.2	4	98	0	2915	50	24	0	25	1.50
16215--16348	3	44.7	3	85	10	177	0	32	0	67	0.96
17258--17307	17	2.9	17	87	0	73	38	14	6	42	1.70
20768--20828	9	6.6	9	75	7	59	42	6	1	49	1.38
20768--20828	18	3.3	18	82	8	68	42	6	1	49	1.38
20800--20840	19	2.2	18	86	4	55	43	7	2	46	1.44
20788--21070	64	4.4	64	82	10	346	38	11	7	42	1.68
20858--20904	18	2.5	19	89	3	69	42	8	2	46	1.46
20984--21030	18	2.5	19	89	3	69	42	8	2	46	1.46
24869--24908	15	2.8	14	81	7	53	77	2	2	17	0.99
24906--24943	2	19.0	2	100	0	76	50	0	0	50	1.00
24974--25299	37	8.8	36	83	8	354	43	7	2	46	1.46
24974--25299	114	2.9	109	85	5	406	43	7	2	46	1.46
26342--26392	22	2.3	23	86	3	68	23	31	19	25	1.98
31863--31901	2	19.5	2	100	0	78	51	0	0	48	1.00
32059--32100	13	3.2	13	89	0	66	35	16	23	23	1.95
38122--38181	6	10.2	6	75	13	54	76	0	5	18	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38130--38181	10	5.1	10	79	11	61	76	0	3	19	0.93
38179--38204	2	13.0	2	100	0	52	50	0	0	50	1.00
38246--38594	73	4.7	75	78	11	326	42	8	3	45	1.52
38246--38594	111	3.1	108	81	10	350	42	8	3	45	1.52
38246--38591	183	1.9	183	81	10	420	42	8	3	45	1.52
38229--38594	37	9.9	37	74	14	269	42	9	3	45	1.54
44839--44914	31	2.5	31	82	0	80	22	7	13	56	1.62
45227--45290	31	2.1	31	93	0	110	40	17	20	21	1.91
48546--48573	14	2.0	14	100	0	56	14	7	28	50	1.69
49817--50026	76	2.8	77	88	2	291	24	32	23	20	1.98
55788--55848	23	2.9	19	85	11	68	21	34	26	18	1.96
55831--55870	21	1.9	21	89	0	62	25	40	25	10	1.86
57771--57818	17	2.9	17	80	17	57	14	0	27	58	1.37
58067--58105	21	1.9	20	94	5	69	46	5	15	33	1.68
58424--58631	76	2.7	77	85	5	255	24	31	23	21	1.98
60001--60043	20	2.2	20	95	0	77	27	23	20	27	1.99
66571--66631	19	3.2	19	75	11	61	22	31	29	16	1.96
75335--75375	21	2.0	21	90	9	68	9	26	0	63	1.25
76853--76978	53	2.4	53	75	2	128	22	22	24	30	1.99
77199--77294	32	3.0	32	85	0	129	39	16	17	26	1.91
78894--78962	32	2.2	32	89	5	104	23	20	4	52	1.64
78903--78966	32	2.0	32	96	0	119	21	20	6	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78959--79047	28	3.2	28	95	0	160	15	23	17	42	1.88

Tables:   1

The End!