Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007299.1 Hibiscus syriacus cultivar Beakdansim tig00019424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71416

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55--326
35
7.6
36
81
11
289
41
6
4
47
1.50
51--327
37
7.8
34
80
13
274
42
6
4
46
1.50
2662--2937
98
2.8
99
91
1
430
31
18
16
33
1.93
6975--7000
13
2.0
13
100
0
52
76
0
7
15
0.99
7016--7050
15
2.3
15
90
0
52
60
0
11
28
1.32
8225--8259
16
2.2
16
89
0
52
57
5
0
37
1.23
8277--8396
37
3.2
37
88
5
163
45
8
2
44
1.47
8357--8423
25
2.6
25
85
7
89
44
7
4
43
1.52
8359--8423
27
2.5
25
92
7
103
43
7
4
44
1.53
8325--8484
64
2.5
62
87
9
236
42
7
3
46
1.47
8385--8460
37
2.0
37
90
7
118
39
6
5
48
1.52
8423--8507
26
3.4
26
84
11
106
43
7
2
47
1.43
8512--8565
23
2.4
23
84
6
76
46
5
0
48
1.25
8367--8564
85
2.3
88
83
10
234
44
6
3
45
1.45
9315--9422
31
3.5
31
80
2
128
36
12
25
26
1.91
9504--9530
2
13.5
2
100
0
54
48
0
0
51
1.00
9570--9623
26
2.0
27
89
3
83
48
0
12
38
1.42
9742--9778
17
2.2
17
90
4
58
37
10
13
37
1.80
10347--10382
18
2.1
17
89
5
54
52
0
0
47
1.00
10870--10977
31
3.5
31
89
1
164
24
25
14
36
1.93
17662--17731
21
3.4
20
75
11
70
62
0
7
30
1.21
19184--19242
3
19.3
3
83
10
75
64
0
1
33
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19184--19243
22
2.6
23
78
19
63
63
0
1
35
1.05
19401--19991
73
8.0
73
92
0
903
33
20
18
27
1.96
20342--20396
22
2.5
22
84
0
83
36
12
16
34
1.87
24524--24585
32
1.9
32
93
0
106
19
17
19
43
1.88
33368--33436
7
10.1
7
75
6
61
79
0
15
4
0.88
33373--33437
11
6.0
11
79
13
73
78
0
15
6
0.94
33363--33433
19
3.5
20
81
14
83
77
0
18
4
0.93
35658--35767
36
3.0
36
89
2
166
34
22
20
22
1.97
35664--35768
37
2.9
37
91
1
167
35
22
20
21
1.96
35779--36910
207
5.4
207
92
2
1783
31
16
20
31
1.94
36568--36680
42
2.7
41
77
2
109
24
23
22
29
1.99
36797--36884
42
2.1
42
97
0
167
23
23
19
32
1.97
45004--45054
2
25.5
2
95
0
93
52
0
0
47
1.00
45201--45259
21
2.9
20
80
14
59
66
0
5
28
1.13
46692--46730
15
2.8
14
88
7
53
66
0
2
30
1.05
49614--49883
46
5.9
46
88
0
362
21
21
14
42
1.87
56670--56881
46
4.6
46
87
3
293
25
20
13
40
1.89
57940--57999
31
1.9
31
93
0
102
40
6
8
45
1.61
58455--58507
19
2.8
20
77
13
58
66
0
0
33
0.92
58516--58670
64
2.5
62
88
9
237
55
2
0
41
1.13
58572--58641
26
2.9
23
80
17
79
54
1
0
44
1.09
58538--58621
40
2.2
37
85
10
107
53
2
0
44
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68086--68116
12
2.6
12
100
0
62
48
0
6
45
1.28

Tables:   1

The End!