genome.fa.s730.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000730.1 Hibiscus syriacus cultivar Beakdansim tig00001417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139936

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327--1352	2	13.0	2	100	0	52	50	0	0	50	1.00
2074--2114	17	2.4	17	95	0	73	14	19	4	60	1.51
3086--3217	63	2.1	63	80	2	140	23	16	20	39	1.92
4254--4305	24	2.2	23	90	6	86	13	23	17	46	1.83
8382--8416	16	2.2	16	89	0	52	71	0	0	28	0.86
8819--8844	6	4.3	6	100	0	52	30	0	0	69	0.89
9617--9901	91	3.1	91	67	17	264	49	4	8	37	1.55
10163--10226	3	21.3	3	93	6	112	67	0	32	0	0.91
10256--10763	3	169.7	3	91	8	808	68	0	31	0	0.89
10791--10880	45	2.0	45	100	0	180	15	15	37	31	1.89
10836--11035	104	1.9	104	96	0	373	21	19	29	30	1.97
27693--27740	21	2.3	21	88	0	69	43	10	16	29	1.81
32352--32399	21	2.3	21	96	0	87	41	12	18	27	1.86
35420--35479	30	2.0	31	83	9	79	45	10	28	16	1.80
39672--39706	15	2.3	15	90	0	52	14	40	14	31	1.86
41471--41497	5	5.4	5	100	0	54	0	18	0	81	0.69
47303--47464	80	2.0	80	98	0	315	39	9	8	42	1.68
56708--56817	50	2.2	51	86	1	150	16	30	32	20	1.95
57089--57301	110	1.9	111	93	0	365	36	7	9	46	1.65
59124--59176	16	3.2	16	72	5	52	41	26	1	30	1.66
59504--59572	23	3.0	23	86	0	93	26	24	27	21	1.99
59588--59805	103	2.1	103	95	0	391	36	24	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60563--60603	21	1.9	22	90	5	66	29	14	0	56	1.39
62064--62104	18	2.3	18	86	0	64	29	29	19	21	1.98
62688--62766	38	2.1	38	81	9	90	32	8	6	51	1.58
66117--66232	51	2.3	51	89	1	171	18	32	34	14	1.91
66771--66810	19	2.2	19	86	4	55	42	0	2	55	1.13
67133--67186	27	2.0	27	82	13	67	38	5	3	51	1.43
68746--69014	43	6.2	42	74	8	193	52	6	14	26	1.65
68760--69039	86	3.2	86	73	8	221	53	6	13	26	1.63
70887--70965	25	3.0	25	82	13	104	21	37	10	30	1.86
77658--77713	28	2.0	28	100	0	112	17	17	39	25	1.92
82994--83063	6	11.7	6	79	0	68	32	0	62	4	1.14
82994--83064	30	2.4	30	92	0	115	33	0	61	4	1.15
83035--83081	21	2.4	21	82	10	64	34	0	63	2	1.06
84924--84948	12	2.1	12	100	0	50	16	36	0	48	1.46
85967--85991	12	2.1	12	100	0	50	48	0	36	16	1.46
89038--89095	18	3.2	17	73	9	53	56	6	0	36	1.26
89031--89119	32	2.8	32	87	5	126	52	8	0	38	1.33
88944--89198	112	2.3	112	92	2	440	53	12	0	33	1.41
89100--89174	22	3.2	23	75	17	82	54	17	0	28	1.43
89146--89387	32	8.7	31	68	29	181	52	13	0	34	1.41
89017--89252	54	4.3	54	77	17	245	53	11	0	35	1.37
89180--89228	22	2.2	22	85	3	62	55	12	0	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89064--89457	134	2.9	134	96	0	736	52	12	0	34	1.40
88954--89332	80	4.7	80	76	14	384	53	13	0	33	1.42
89234--89308	22	3.2	22	75	14	69	54	16	0	29	1.42
88954--89332	112	3.5	106	73	17	307	53	13	0	33	1.42
89263--89386	54	2.3	54	98	0	239	52	12	0	34	1.40
89314--89362	22	2.2	22	85	3	62	55	12	0	32	1.37
89397--89492	22	4.2	22	68	7	75	52	9	0	38	1.34
89303--89554	54	5.1	48	75	17	157	51	8	0	39	1.32
89437--89554	15	7.5	15	79	13	121	51	2	0	45	1.14
89397--89538	67	2.1	67	85	5	187	50	6	0	42	1.27
91410--91443	16	2.1	16	88	0	50	35	8	23	32	1.86
99925--99980	29	1.9	30	88	3	87	32	3	1	62	1.23
100199--100271	29	2.5	29	86	2	101	68	4	2	24	1.20
101297--101548	128	2.0	129	88	3	375	38	4	8	48	1.53
105158--105339	70	2.6	69	81	8	179	30	13	9	45	1.76
128711--128739	2	14.5	2	100	0	58	48	0	0	51	1.00
135395--135434	21	1.9	21	100	0	80	57	15	5	22	1.57
136460--136496	19	1.9	19	94	0	65	32	29	16	21	1.95
136533--136573	19	2.1	19	86	4	55	39	17	14	29	1.89
136570--136617	21	2.3	21	96	0	87	22	22	27	27	1.99
136607--136667	20	3.0	21	88	7	90	22	26	21	29	1.99
136609--136674	20	3.3	20	87	4	89	24	24	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136900--136947	22	2.2	22	92	3	80	68	8	4	18	1.31
136900--136956	22	2.6	22	86	8	64	64	10	5	19	1.43
137218--137269	16	3.1	17	78	13	63	38	0	1	59	1.08
137428--137485	21	2.8	21	94	0	98	32	17	24	25	1.96
137490--137530	21	2.0	21	90	0	64	26	21	21	29	1.99

Tables:   1

The End!