genome.fa.s7300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007300.1 Hibiscus syriacus cultivar Beakdansim tig00019426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101434

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3853--3988	67	2.0	68	95	4	249	44	8	7	38	1.63
5530--5593	33	1.9	34	87	3	94	45	4	4	45	1.45
7486--7547	31	2.0	31	96	0	115	22	14	38	24	1.91
7551--7602	22	2.4	22	87	3	79	23	28	32	15	1.95
7648--7735	29	3.0	29	81	0	113	20	30	32	15	1.94
14324--14613	54	5.3	55	86	3	374	28	16	18	36	1.92
14324--14613	109	2.7	109	88	4	401	28	16	18	36	1.92
20773--20807	18	1.9	18	100	0	70	25	34	17	22	1.96
22592--22884	55	5.4	54	83	2	336	28	15	18	37	1.91
22592--22884	110	2.7	110	83	0	381	28	15	18	37	1.91
32766--32790	13	1.9	13	100	0	50	32	44	16	8	1.76
43983--44021	17	2.2	18	95	4	71	28	7	17	46	1.76
45951--45984	17	2.1	17	94	5	61	11	8	5	73	1.24
51971--52038	22	3.2	22	70	16	70	27	17	19	35	1.94
51864--52040	42	4.2	42	91	0	273	26	21	18	33	1.96
52079--52103	13	1.9	13	100	0	50	32	24	20	24	1.98
52099--52173	22	3.5	21	68	21	57	22	22	25	29	1.99
52091--52190	42	2.4	42	89	1	148	22	26	24	28	1.99
52219--52390	53	3.2	53	90	1	274	30	22	26	20	1.98
55992--56054	33	1.9	33	96	0	117	9	14	41	34	1.78
55996--56066	33	2.2	33	87	5	99	9	16	38	35	1.82
57419--57491	21	3.4	21	73	3	74	26	23	23	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57858--57927	34	2.1	32	86	5	95	31	15	30	22	1.95
60964--61003	20	1.9	21	85	10	55	37	37	10	15	1.80
61218--61287	34	2.1	32	84	5	86	32	15	28	22	1.95
72552--72715	80	2.0	80	96	0	301	37	24	12	26	1.90
77129--77163	17	2.1	17	94	0	61	20	11	31	37	1.88
91855--91972	62	1.9	62	84	3	157	33	19	18	27	1.95
92548--92582	18	1.9	18	94	0	61	25	20	28	25	1.99
94014--94040	14	1.9	14	100	0	54	44	0	0	55	0.99
95124--95164	20	2.0	21	90	4	66	41	36	7	14	1.74
97373--97405	17	2.0	17	88	5	50	63	6	6	24	1.40
97435--97472	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1

The End!