genome.fa.s7302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007302.1 Hibiscus syriacus cultivar Beakdansim tig00019439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101247

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2932--2974	16	2.7	16	88	0	68	25	25	25	23	2.00
6335--6480	36	4.1	36	94	1	249	48	11	24	15	1.78
6335--6480	71	2.0	71	93	1	247	48	11	24	15	1.78
14786--15032	59	4.2	58	73	11	184	29	23	12	34	1.92
14879--15127	117	2.1	117	80	5	272	29	22	11	36	1.89
19126--19238	60	1.9	60	84	0	154	45	2	16	35	1.62
19411--19457	18	2.7	18	90	3	69	34	8	29	27	1.87
19873--20340	228	2.0	225	90	4	683	40	18	12	28	1.87
31674--31750	21	3.5	21	77	10	73	22	24	18	35	1.96
31703--31750	24	2.0	24	91	0	78	25	27	16	31	1.97
31740--31791	21	2.5	21	87	3	70	38	17	23	21	1.93
31737--31873	41	3.3	41	74	11	102	30	19	18	30	1.96
31801--31873	21	3.5	21	79	3	76	23	21	17	36	1.94
31740--31934	20	9.6	20	70	12	76	32	19	19	28	1.96
32491--32535	19	2.4	19	92	0	72	48	26	15	8	1.74
32553--32641	14	5.6	14	69	23	61	11	24	22	41	1.86
32536--32665	33	3.9	33	94	1	206	11	24	21	42	1.86
43696--43743	19	2.5	20	82	3	62	52	6	12	29	1.63
45086--45151	19	3.5	19	89	0	78	42	10	10	36	1.74
46906--46972	21	3.2	21	66	6	55	23	35	20	19	1.95
46854--46972	42	2.8	42	81	5	107	22	36	18	22	1.95
48329--48362	14	2.4	14	95	0	59	32	0	23	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48487--48543	14	3.7	14	75	20	60	43	22	24	8	1.81
48469--48558	33	2.7	33	94	0	153	43	21	22	13	1.87
48469--48529	19	3.5	19	74	21	69	44	21	22	11	1.84
48558--48684	33	3.9	32	80	8	148	16	19	19	44	1.87
48551--48683	66	2.0	66	89	0	203	18	19	19	42	1.89
48626--48684	19	3.4	18	71	22	54	13	18	18	49	1.80
50976--51000	12	2.1	12	100	0	50	0	28	0	72	0.86
52013--52064	21	2.5	21	87	3	70	38	17	23	21	1.93
52053--52132	20	3.9	20	75	12	63	36	22	18	22	1.95
52092--52141	20	2.5	20	80	0	73	38	22	18	22	1.94
52355--52450	20	4.8	20	76	5	104	41	21	18	17	1.90
52491--52536	19	2.4	19	96	0	83	15	19	15	50	1.79
52673--52709	14	2.6	14	86	0	56	48	21	0	29	1.50
54153--54212	21	2.9	20	73	11	59	20	13	45	21	1.85
54579--54646	20	3.5	20	85	2	93	41	23	20	14	1.89
54619--54711	33	2.8	33	93	1	161	47	20	18	13	1.82
54635--54693	14	3.9	14	74	20	55	49	20	16	13	1.80
54683--54727	18	2.4	18	85	3	54	46	24	17	11	1.81
54650--54733	19	4.8	18	74	14	61	45	21	19	14	1.85
54723--54819	19	5.7	18	72	22	93	15	18	19	46	1.84
54726--54819	33	2.8	33	93	0	170	15	18	19	46	1.84
54747--54803	14	3.7	14	72	20	51	14	14	21	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54804--54847	20	2.2	20	88	4	63	18	25	20	36	1.95
54813--54858	20	2.3	20	84	0	56	17	21	23	36	1.94
55340--55385	18	2.5	19	85	3	67	15	15	43	26	1.85
56689--56742	20	2.7	20	88	0	81	38	25	18	16	1.92
57196--57291	20	4.6	22	73	12	87	21	17	22	37	1.94
57196--57293	41	2.4	41	87	0	151	21	17	22	38	1.93
57196--57311	41	2.8	41	82	2	117	20	19	22	37	1.95
58727--58890	77	2.1	77	94	2	285	50	10	9	29	1.69
72041--72080	20	2.1	19	90	4	62	32	25	0	42	1.55
72042--72081	10	4.0	10	84	12	55	32	27	0	40	1.57
72205--72424	109	2.0	111	90	1	354	37	8	8	45	1.65
74308--74341	6	5.7	6	92	0	50	32	20	35	11	1.89
74472--74543	26	3.0	24	68	27	62	27	6	2	62	1.35
77042--77087	21	2.2	21	100	0	92	41	19	13	26	1.88
83420--83473	11	4.8	11	73	13	56	53	0	0	46	1.00
83432--83479	16	2.8	17	81	12	53	58	0	0	41	0.98
91231--91415	83	2.2	83	90	1	273	35	21	19	23	1.96
91231--91466	83	2.9	82	84	5	235	35	21	19	24	1.96
93268--93301	13	2.7	13	90	4	52	20	2	2	73	1.09
93432--93466	2	17.5	2	100	0	70	48	0	0	51	1.00
93646--93711	23	2.7	23	79	11	62	16	6	1	75	1.07
93741--93790	24	2.3	23	80	16	61	14	2	4	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93741--93784	16	2.9	15	80	6	52	13	2	4	79	0.98
94362--94409	16	3.1	14	75	18	51	75	2	2	20	1.02
94782--94814	2	16.5	2	100	0	66	51	0	0	48	1.00
94852--94906	2	29.0	2	83	10	71	52	0	1	45	1.11
94849--94913	25	2.7	25	83	11	91	53	0	3	43	1.16
99909--99952	21	2.0	22	83	12	56	29	15	0	54	1.42

Tables:   1

The End!