genome.fa.s7303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007303.1 Hibiscus syriacus cultivar Beakdansim tig00019440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62732

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4056--4118	33	1.9	33	96	0	117	34	22	11	31	1.89
7834--7874	16	2.6	16	88	11	59	34	21	4	39	1.75
8063--8106	17	2.6	17	77	0	52	59	0	0	40	0.98
14823--14864	20	2.1	20	90	0	66	42	0	0	57	0.99
17732--17819	30	2.9	30	91	1	131	36	15	15	31	1.90
18636--18670	13	2.6	14	86	4	54	42	37	0	20	1.52
18575--19089	258	2.0	259	93	1	890	40	18	7	34	1.78
20206--20243	20	2.0	19	90	10	60	47	5	23	23	1.72
20205--20248	20	2.5	16	80	20	52	45	4	22	27	1.72
27720--27761	22	1.9	22	90	0	66	52	11	11	23	1.71
31224--31325	50	2.0	50	96	0	186	55	14	2	26	1.53
31478--31534	30	1.9	30	88	0	87	17	40	21	21	1.92
34858--34917	31	2.0	30	86	3	84	31	1	1	65	1.13
35315--35472	21	7.8	20	71	9	88	38	25	16	19	1.92
35375--35491	20	5.7	20	75	12	78	38	23	17	20	1.93
35459--35688	20	11.5	20	82	6	234	37	24	18	19	1.93
35478--35688	40	5.3	40	92	1	282	36	24	18	20	1.94
36592--36616	12	2.1	12	100	0	50	72	0	28	0	0.86
38912--39027	53	2.2	52	87	1	160	18	22	18	39	1.92
38950--39047	19	5.4	19	84	13	143	14	21	17	46	1.83
38931--39047	52	2.2	53	98	1	227	13	23	17	45	1.84
39106--39254	33	4.3	33	73	18	142	44	18	24	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39106--39235	19	7.3	19	79	17	163	45	17	23	13	1.84
39244--39379	19	7.6	19	78	17	166	15	24	16	43	1.87
39106--39254	52	2.8	52	98	1	289	44	18	24	13	1.85
39244--39379	33	3.9	33	72	20	125	15	24	16	43	1.87
39244--39379	53	2.6	52	94	2	236	15	24	16	43	1.87
39486--39522	14	2.6	14	91	0	65	45	21	0	32	1.52
41498--41554	14	3.7	14	77	20	60	45	22	21	10	1.82
41479--41571	33	2.8	33	95	0	168	47	21	20	10	1.80
41442--41576	19	7.6	19	76	16	128	45	23	19	11	1.82
41572--41700	19	7.3	19	75	17	125	8	17	28	45	1.77
41572--41663	33	2.8	33	93	3	150	7	18	28	45	1.76
41744--42216	93	5.1	93	98	0	903	45	18	12	22	1.83
43917--44006	14	5.7	14	74	23	81	42	23	25	8	1.83
43909--44023	33	3.5	33	95	0	212	45	20	24	9	1.81
43916--44028	19	6.8	18	72	23	88	43	22	24	9	1.83
44040--44096	14	3.7	14	75	20	60	8	24	22	43	1.81
44024--44104	33	2.5	33	93	0	135	8	22	23	45	1.79
44081--44156	21	3.7	21	85	3	109	11	25	18	44	1.83
44080--44157	41	1.9	41	94	0	138	12	25	17	43	1.85
44235--44305	33	2.2	33	89	0	106	47	16	23	11	1.79
44486--44540	22	2.5	22	81	0	74	20	16	40	23	1.91
44686--44879	20	9.6	20	81	5	212	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44686--44879	60	3.2	60	82	0	244	19	19	25	35	1.95
44866--44948	21	4.0	21	73	6	78	25	16	24	33	1.96
44846--44944	42	2.4	43	77	11	100	21	18	23	37	1.94
45119--45163	23	1.9	24	86	4	65	26	2	0	71	0.98
53553--53835	124	2.4	116	76	7	273	48	9	13	28	1.72
56729--56753	10	2.5	10	100	0	50	32	20	0	48	1.50

Tables:   1

The End!